Protein Info for mRNA_6132 in Rhodosporidium toruloides IFO0880

Name: 14500
Annotation: K20630 CHN1_2, ARHGAP2_3 chimaerin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1120 PF00412: LIM" amino acids 65 to 118 (54 residues), 31.3 bits, see alignment 2.9e-11 PF00130: C1_1" amino acids 852 to 895 (44 residues), 28.7 bits, see alignment (E = 1.5e-10) PF00620: RhoGAP" amino acids 939 to 1087 (149 residues), 146.9 bits, see alignment E=6.4e-47

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1120 amino acids)

>mRNA_6132 K20630 CHN1_2, ARHGAP2_3 chimaerin (Rhodosporidium toruloides IFO0880)
MLEGRNAACKQGLDEALDNTVVSFGKYLFHVDCRCAKCHNLVEHNTNLLLLSDGSPVCEN
CSYICNVCQKPIHNEAIVTGDESYHADCFRCRSCSNRIEELIFAKTQQGIWCMACHNERV
ARTRKHAEAKRKARKEKEKDPSAPRASRSRSEGGRSSSVGGDADRTAELPDLPPPPPLPT
PGPSTSAKNESVSPVRPLPPSPYHRSTSFDSTQHQRSLTNSSDPSRLGATLPPSSSVQSI
SSLSRSATPLQPPSATHSRTPSQASAYNGEPAEAQRRPTASALRREISDLPRRQSDGLDD
PPRDFSPYPMPESPAPPPHKRREESDGLLPESTSRSGSLSAPSGVDKAANRRSGFYGAAA
RPSLGEDGILSQLEDSRTVGRSSPAPPADPRDHRSHTPSTSPPPPLARSASQDLHASASF
YDPDTLLFLNHVGGSAPSSPKLGNSSKALPEPTLNEDHLERMPSPGPVDVSGDEDDAGGR
EGKSEVARRVRESIQMQKRESSGRADGESEQPLSVAGLDVELVEMLLSELESTKREMKEL
KSKYNAFRRASRSAFEGFSLAREEYDKEVAARREAEAQMELLRTKFIEQARRLAQVDQEQ
KTAESLKRQSKDLRNSVIGMEKHLSQLKAEVALSTAQVAELTVLGEETGAPDRSSLASTQ
DEVAEALNSRLEAIKDAHRDEISALVAERDDLLRQVAELKQVRDAHLAETTVLETRNVAL
AEKNADATRQIDNLQESLAKMQLLSAKSPAPSRNGHMHSPSNASLLSSVASGARSPLATA
RYISSPGEGESMHRFARPEVVETSSRNKFWGKSKGKSETSKANQQLPPPPPGNKSPVVSM
RAGSIDSNVKQHVFQQTSILRPVRCDYCGDKMWGLAEVRCTACGSYAHAKCAPYLTGCHP
GGGSPVPPQDDTLNFTPTGPPMFTGDLAAQADKEGSEVPVVVTKCIAAVEAYGMTYEGIY
RKTGGMGQTKLITQYFERGQDFDLEDRDKFNDIAAITSCLKNYFRSLPNPLMTHELHEEF
IAAAELPEGDERLRAIERVLYRLPPAHFHTARLLFRHLNRIKSLANENKMTSANLGVVFG
PTVLRSPIAAREWSDMGPKAKLIEILCDHADSLFLKPYAS