Protein Info for mRNA_6143 in Rhodosporidium toruloides IFO0880

Name: 14511
Annotation: HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 816 transmembrane" amino acids 590 to 609 (20 residues), see Phobius details PF04082: Fungal_trans" amino acids 234 to 441 (208 residues), 72.3 bits, see alignment E=1.7e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (816 amino acids)

>mRNA_6143 HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906 (Rhodosporidium toruloides IFO0880)
MGGLGADPTQERIAEKHRELEERIRSLEAELEYYRQGGTAPPSTSPYPANGNGTTSTNGL
FPPPPGSSSSPATHALPLPGLEDPHAALNVPQQYSAYNGSSSDPYGGFHDPSTSSQRESE
AFPLPPPHLHPLPPSSAGIGLATPATNTSPSLTAPAAHLQSFPFPINPTPPNLSDLINPP
LSAGPTSAGAGAGGGGGAQFSPESPVSPALNGGTLAPSWGTELPSLEVMLDLSDLYFSTL
HQHLPFLHRRRFLYTLHHPSSLASPPSQSLIFSVLAVAAAYHDSPLIRAQGPIWYALARE
KVDVAISAGVNPQSGNRVATLTVEMVQALCLLSLVEMGQSDHQRAFLSMGQAVRIAAMLG
LHRMDEDRVALRTGAMREKRLRPPALHPLPRDPVLLEECRRTMCTVYILDRFESATVGWP
SAIAESDVRILLPCADELFESGLCDAEGRDNPLFWPADDLGTSAEKGWKGIREEEEAEKR
ESLNGAGGVKSEVATEGVEASAGKGASPHVPKVGTFAWLCRVVWLGGRIQAETYRASGPP
AGGPWNKHVNLDPLESAAECLEMDQVLDYIRTKFSAIAAKKAQMQKGVDGPVLMILMFVN
CMFTNLFHLRAASGLSRLPWDPSAPIYVGSSEYAMQRCWEAIHSLHEILSQLAAYENSRT
TLHRSRANVFTSFVPYTLFAAAFPSKVAIGDWSVLVAARDRTENVPASVARDDLPSGDDA
FPPHYLERRLAFVDVACDAMDRMGVVWPVGKKFAAMIRGDRMRLAARAYERSTAASAAGQ
PIVSSSPHQPTAPIYHSPPLGANQHLNGSASAGGGY