Protein Info for mRNA_6173 in Rhodosporidium toruloides IFO0880

Name: 14541
Annotation: K00698 CHS1 chitin synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1194 transmembrane" amino acids 149 to 164 (16 residues), see Phobius details amino acids 187 to 206 (20 residues), see Phobius details amino acids 265 to 291 (27 residues), see Phobius details amino acids 741 to 761 (21 residues), see Phobius details amino acids 767 to 788 (22 residues), see Phobius details amino acids 797 to 817 (21 residues), see Phobius details amino acids 823 to 846 (24 residues), see Phobius details PF03142: Chitin_synth_2" amino acids 394 to 892 (499 residues), 816.4 bits, see alignment E=1.7e-249 PF13641: Glyco_tranf_2_3" amino acids 565 to 734 (170 residues), 42.6 bits, see alignment E=1.1e-14 PF13632: Glyco_trans_2_3" amino acids 569 to 781 (213 residues), 46.4 bits, see alignment E=7.2e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1194 amino acids)

>mRNA_6173 K00698 CHS1 chitin synthase (Rhodosporidium toruloides IFO0880)
MSYPSRNPNAPHYPRGQTYEPDPAAFHSTSYPSTGVAANPAYPSDPTARYGLPPGAGAGG
GGGMNRRQTVRGAQRGTVREAGANPRLSMAPGPQRGLTRGKTLTRPDRFVAPAPLIAPAG
LGKAAKQGGNVQTKLVDGVPTLVASEPWWSPWSLFVEIVTFWAPRPLLRTFGMTDPVKQR
AWKEKVALCEIAAFLMGIIGFITIGLNRTLSLRVSLAKSTSGSKDATRIFYTSDELKRSV
KCLASRYYAGHIDKITPGCFVSNLFLYVSLILIMGIVLARFFMALVFSWYLADRMVRKPR
NLKRSVVSPAVLPEGANIDVTNTTGQAPWVESHVKRQQTMRLKKGGGRRGAASEKALPLS
PSEKPRGGAPKGRNGTDVALPVGQDGMISMASIGAELFCVCLVTCYSEGYDGIKTTLDSI
AATNYSDARKLLFVVCDGMITGSGEKMSTPDIVVSMIERDARFGDPQPMSYVAIADGAKA
HNQAMVYAGHYTQVAGHRTPIIVVVKCGTPAEASEAKPGNRGKRDSQMVLMNFFGRVTYN
DRMSPLDYDLFRKTQSLMGVTPDFFEVCLMVDADTMCYPESLGYLVRVMQNDNMVMGVCG
ETRIANKRQSWVTMIQVFEYFISHHLAKAFESVFGGVTCLPGCFSMYRIKARKQDDGDWF
PVLVSPTITSEYSQSVVTTLHQKNLLLLGEDRFLTTILLRTFPNRKMMFCPKARCRTVVP
DTFKVLLSQRRRWINSTIHNLMELVLVRNLCGTFCFSMQFITFIDLIGTVVLPIAICLTY
TLIISSIINPPNSFGDAIPLVLLVGVLGLPGILILISTMKVVYVGWMLIYLLALPIWNCV
LPLYAFSKFDDFSWGETRKVAGETKGGDDHGASGGVSAASAVPLRRWEDWEKSRLRKIRR
EEKRRREFERQFGSRAVHPHHSISTFAESETASSFGGPDEDRWGQQIGAYNEDATSLENV
PPPVGLYSLDEVEDDDDQTLNQHDLVNVLEVGWDDASPIGSPLPGATYPHHGNGSGYSTP
SEQAHLQPRQQGYGQQQHYQAPTRGWTLTDTPLSAPPMTKTASSASNLPLNASSSSLASS
GRSSPRADDPFADANSPGGVQPPPLISPLSFAHDPSYTSLASSTATGFNTSVSSEQQHAR
RRSLTNSPQATRGDPLMGSGAGTPSPTKDGRFDWPSDPRNGGGSSGGGGGRRLV