Protein Info for mRNA_6176 in Rhodosporidium toruloides IFO0880

Name: 14544
Annotation: K03000 RPA12, ZNRD1 DNA-directed RNA polymerase I subunit RPA12

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 126 PF01096: TFIIS_C" amino acids 86 to 121 (36 residues), 51.4 bits, see alignment E=1.1e-17

Best Hits

Swiss-Prot: 44% identical to RPA12_SCHPO: DNA-directed RNA polymerase I subunit RPA12 (rpa12) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K03000, DNA-directed RNA polymerase I subunit RPA12 (inferred from 50% identity to cne:CNC02990)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (126 amino acids)

>mRNA_6176 K03000 RPA12, ZNRD1 DNA-directed RNA polymerase I subunit RPA12 (Rhodosporidium toruloides IFO0880)
MAAAQNHFGSLIFCSRCSTLLDLPGDEDQLVCDACGQVEDATAYEGKVITTKSNPAAFPS
SLRQLKTSLVKNRGDVEKKKVYVDETCEKCGAKQMSVKTMQLRSADEGATVFYSCDKCGY
QTRLNN