Protein Info for mRNA_6178 in Rhodosporidium toruloides IFO0880

Name: 14546
Annotation: K17623 HDHD1 pseudouridine 5'-phosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 PF13419: HAD_2" amino acids 42 to 224 (183 residues), 73 bits, see alignment E=3.5e-24 PF00702: Hydrolase" amino acids 105 to 218 (114 residues), 47 bits, see alignment E=4.1e-16 TIGR01509: HAD hydrolase, family IA, variant 3" amino acids 117 to 224 (108 residues), 38.6 bits, see alignment E=5.8e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (262 amino acids)

>mRNA_6178 K17623 HDHD1 pseudouridine 5'-phosphatase (Rhodosporidium toruloides IFO0880)
MPHPQVSAVLFDMVRFVPSAENAFIALTVRSRSRSSHTASQDGLMIDSERLYTVATNEVL
EPYGKSLTWEIKADLMGRPAHESAARLIAATGIPLSVDELLSTMDKKLDRLFRTVEPLPG
VIKLVHHLEKHKVPMAIATGSKKKNFLIKSAHLGHLFDCFSTNILCGDDPILEGKGKPDP
TIFIEAAKMLGINTPEERKKVLVFEDGVSGVQAARAAGMEVVWIPDPELLNTLGDHNLDP
SHQHSSMEDFDPGAWGLPPYDQ