Protein Info for mRNA_6182 in Rhodosporidium toruloides IFO0880

Name: 14550
Annotation: K06665 SSN6 glucose repression mediator protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1054 PF13181: TPR_8" amino acids 72 to 97 (26 residues), 13.7 bits, see alignment (E = 3.8e-05) amino acids 175 to 206 (32 residues), 12.3 bits, see alignment (E = 0.0001) amino acids 249 to 281 (33 residues), 25.9 bits, see alignment (E = 4.6e-09) amino acids 322 to 352 (31 residues), 21.3 bits, see alignment (E = 1.3e-07) PF07719: TPR_2" amino acids 249 to 281 (33 residues), 23.3 bits, see alignment (E = 3e-08) PF13174: TPR_6" amino acids 251 to 279 (29 residues), 14 bits, see alignment (E = 4e-05) PF13432: TPR_16" amino acids 361 to 422 (62 residues), 19.8 bits, see alignment 6.4e-07

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1054 amino acids)

>mRNA_6182 K06665 SSN6 glucose repression mediator protein (Rhodosporidium toruloides IFO0880)
MAAPSVQAGYSGAHGNPPPPPPLTMAGGPPQQGPSVLQILAMGQERNHAADAMAHHPRIE
SLVKLGKEAEATWLQIGQTAEAVGDLDRAIAAYESALRHNAYSVVALSQIAAICRSREEF
KKAAEYFGRVVGIAPESGDVWGALGHCYLMIDDLKKAYSSYQQALYYMPNPHEPKLWYGI
GILYDRYGSLEHAEEAFSSVIRMDPNFEKANEIFFRLGIIYKQQRKSAQSLECFRYILNN
PPRPLTEIDIWFQIGHVYEQQKDFIAAKESYERVLQENPAHAKVLQQLGGLYHRSRAPFY
NPEVSVQILTKSLESDPNDPFSWYLLGRAYMTTNNFGKAYEAYQQAVYRDGKNPAFWCSI
GVLYYNINQFHDALDAYSRAIRIHPYLGEVWFNLGALYEACNDQMTDAIDAYQRTLQLDP
SNQAVAQRLREIREHQASGAPLSPPPPPKDISPSSLSWNYATNSGGAPASIGQAGLGPDV
SPPLPTQPGSAAGPPGTGGRGGPPPPPTGGSGSPPINGHRFEPQPPNTAGSRPRSTDPYR
RTSGTHHSPSNSIDHSPRNGAAAHRLPQIKNLAADGRAPAVVAQRTGSPPSPRTRKTEGG
AGGNSHVPPPPPGGYPFPSHLAAGPSANGDAMDWERGGASRQGSSAGPRSAHGPPGPPPP
RMHPHAHPHSPPVHPAAAAIGASHHGHLPPPPPPPHHPHPHAHPHPFDRHPPPPPGSARG
PFYDNPPPGPYGGYPPAASSSGEYARRRSSGSSHPGQSAAGEVKPEPVAAAPTSVPVPVK
GRGGRKKAITEEGEAGAGATPAKKGGRKGKAAAAASAGDGEPGSTTPKKKRETKAQKEKA
AQAQAQAQAQAQEKDAAAKAAAVLNGVANAARQPTQSQPQRNVDEDYDEGVDALMSLSTP
APHAKASPAAPSPIPAPASVPPPHPSVSASSTPVPPTIPPPHPSSSSANPRKRSLQPDAT
ESVVETPASASASAEATEAKDEAGEPDAKRQKNDVGEEKSAEEGELTTNGSTGEAAKVEP
APVEKSEVAPVEAKKEDAAAESTKEEGEVASSTA