Protein Info for mRNA_6190 in Rhodosporidium toruloides IFO0880

Name: 14558
Annotation: HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 510 transmembrane" amino acids 84 to 102 (19 residues), see Phobius details amino acids 116 to 135 (20 residues), see Phobius details amino acids 156 to 179 (24 residues), see Phobius details amino acids 194 to 214 (21 residues), see Phobius details amino acids 222 to 241 (20 residues), see Phobius details amino acids 254 to 277 (24 residues), see Phobius details amino acids 291 to 315 (25 residues), see Phobius details amino acids 346 to 370 (25 residues), see Phobius details amino acids 383 to 403 (21 residues), see Phobius details amino acids 413 to 435 (23 residues), see Phobius details amino acids 456 to 476 (21 residues), see Phobius details amino acids 484 to 503 (20 residues), see Phobius details PF02133: Transp_cyt_pur" amino acids 72 to 488 (417 residues), 123.2 bits, see alignment E=6.4e-40

Best Hits

KEGG orthology group: None (inferred from 54% identity to scm:SCHCODRAFT_57332)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (510 amino acids)

>mRNA_6190 HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744 (Rhodosporidium toruloides IFO0880)
MSTSSHSGEIKDAYDVEEKGAATAPHLESGAEVVSAHDGVNRDKGVIGWLWKVAMKLDSY
GVEVRGVERVPPNERHHTGVFDAGYLWASANMTISTFSLGTLGNSIWELQGTDACLTILF
FNLLTTLPVAVFSCWGKSTGLRQMILGRFSFGPWTILFPIALNCLACIGWSTINTIVGAS
ALKAVSDTHQLPEPVGIIIIALITLVVSLFGYRYVHAFERYGSVPIFVIFCIMFGQAGKY
MHGGMGGVGEAEAASVLSFGGTIAGFALGWTSLAADYTVNFPAETPDWKVFLSTYIGLNF
PLVFVECLGALMMTTFVDKTTWADAYDKGGLGGLLGAPLVGPMGGFGRFLLVVLAMSIVF
NNIPNVYSFALTFQAFGKYCQAIPRFFLCIVCTAIYIALAEAGYNSFESAFDTLLVILSY
WLAIYSCILLIEHYFIRRGWQGYNLDDYNNYKKLPVGIAAAVSAGFGYVGRIGGLVAPPF
GMDIGFELAFGFTAITYPVFRLIERHYTGR