Protein Info for mRNA_6202 in Rhodosporidium toruloides IFO0880

Name: 14570
Annotation: KOG4475 FOG Immunoglobin and related proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1006 PF00628: PHD" amino acids 581 to 626 (46 residues), 33.2 bits, see alignment 1.9e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1006 amino acids)

>mRNA_6202 KOG4475 FOG Immunoglobin and related proteins (Rhodosporidium toruloides IFO0880)
MSSPSTRSATRPQRKERQTRLQEHLRTVKGPGGGRSASPASTSAPKGRRASAKEEQEERE
EEEQGKAGRPRRRAAKRVVMKEVESNSESEQEEEDAASEQEEAQEEEEEEEEKPRHGASR
RTKKRPSPQQESDNELAPAIKATSSTPARPSTSARKSPSKQPPTSSAQASKRRREPSNLK
LRNVEDMDAAEVKRRLEKEKSELMARLSQHGIVPQADVLDRALRSMSSSNEKLTVDGFLR
SLSSLDANVSPIASQQRPPQPPALTVSVQAANAAANGKKVSFNTLESPSTPSSADRPAFL
FPSPPQQAPATLLPSTQPASLLPLPPAFGDMPPKPAHPGAARAARLSAFASRSFSAPNIP
TLNTLQTAVPSGLPIPPPLPSPSAASGLVATSVAGMGRVALSRRSMFGSIGPDVMQQSLS
SPVEAVPPQGLLPAFSNSSSSALRQSRSSPIKPSSTASKVPSDASRLLKLQSWLDDDGET
TEDEDDKRPGAAVAAEATFKAVAAKSAIASVPPPKGMKMVDVPASDDEEGGGRMRVGGKS
VQVLRQSHKRQLEDHVDASSMSTRMSTRSAVKGKGRAVAECVCGKQAEGNPSAVQCAECD
VAFHLSCLNVASARQLASPWVCNRCAIAGQTTAQGEAENVQTTPRMTTKRVRIGTNSTPH
ILSEPTFVASTPVSAPRSNNFSFAMDIALAPSPTASPVRRFTSAAAPTSPPPNKHLVIPV
TPQFGEATIRAPGDYSPTSPQNSRVRANRTRMISNGAGGFLGSEWLHGWDGHAYEQGAHP
APAPQNALNGFVEENWPLPAWSDVTMTPSRALTNSTPATSTSSSAWDTPFAHSSAHPSSQ
SRRSSATFAHPSASIGHFRTPSQDLLAALDRDHHSPSAHHTFAQRLFGSAGPTADSHHYA
HDPAAAPFSSPTTRPISPLNPRRHLQHGYAQHRRQPSFGDGLGRPFFPPHSPPAAHSFVP
GLAHERMALSASMKVSHSAPGGRVAPGGFMASPGGYGGDGFDDLLL