Protein Info for mRNA_6203 in Rhodosporidium toruloides IFO0880

Name: 14571
Annotation: HMMPfam-HbrB-like-PF08539

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 748 transmembrane" amino acids 249 to 268 (20 residues), see Phobius details PF08539: HbrB" amino acids 143 to 320 (178 residues), 166 bits, see alignment E=4e-53

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (748 amino acids)

>mRNA_6203 HMMPfam-HbrB-like-PF08539 (Rhodosporidium toruloides IFO0880)
MASYATHANGGAFISEPGSPRRTSTTQRRASAEQVREVGRKRSSSVTDGVQRTNSRIAQG
IAASLAPTRRRSSGLGEQAGSSAGVGRLSFSGLGRAASVRPGQRTPTLPSSTSPVVPVFR
TLESYSAKNVAAAFEPVVDTRQVDDVWQQVCVRVLPLFNGEGMRGYVEELNELVLTHVQR
TFARCQTSRVRLQGQLPSVNLSSLVTGLLVADLTDLIRTGLTTLANKLSPLAPALPLNDD
RLLSRLNEIWLFFFTGILPHLEAVFWVLRSDDRLRAAVGETWEERERQGRTGHAEGRIDV
RRIALIEFRDQIIHPEIGRLLHLFKSLYRVPPGHPDVERSRQGSQEPSASPTPPDIRRTR
SQPPPQNGAQSPAFVPPPSPHPQRQHSSPSRLSPDPKFLTSFPSPSNTLLSPTVSQFSPS
TFASPPTPSDPFTGSASAPISSEIGPAAATQALARRRQMIAVLSSLLTADDRQQEMDSLM
RAIRPEFNSRYSRRRSSIDSEDIARAASRAGGDGRARAASEGYGTPVIVGPMDDAGRSVP
ESGANTGMTGSPVMLTDEPSSFSDDTHLLPPPIPAAVPLAPLAPTAASSHHNLLSTTERK
ITARQRSRTMDSLDEEPPHIDHSQHPMPHPLPAAVTSRASLDVAPSAEAEKQQQAKKQRR
RSFRPWLGRSNSANSYGSGASSTLDEDVVADDSSSSRPGSGHGSVSLGGDKLRRGLLRRN
SSKKAVELSAVPQLGVASGFAVEGDVLE