Protein Info for mRNA_6208 in Rhodosporidium toruloides IFO0880
Name: 14576
Annotation: K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K00006, glycerol-3-phosphate dehydrogenase (NAD+) [EC: 1.1.1.8] (inferred from 68% identity to scm:SCHCODRAFT_54510)Predicted SEED Role
"Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization or Glycerolipid and Glycerophospholipid Metabolism in Bacteria (EC 1.1.1.94)
MetaCyc Pathways
- CDP-diacylglycerol biosynthesis I (4/4 steps found)
- CDP-diacylglycerol biosynthesis II (4/4 steps found)
- phosphatidylglycerol biosynthesis I (plastidic) (5/6 steps found)
- phosphatidylglycerol biosynthesis II (non-plastidic) (5/6 steps found)
- glycerol-3-phosphate shuttle (2/2 steps found)
- superpathway of phospholipid biosynthesis I (bacteria) (9/12 steps found)
- CDP-diacylglycerol biosynthesis III (3/5 steps found)
- phosphatidate biosynthesis (yeast) (3/5 steps found)
- 1,3-propanediol biosynthesis (engineered) (5/9 steps found)
- glucosylglycerol biosynthesis (2/5 steps found)
- superpathway of phospholipid biosynthesis II (plants) (15/28 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 1.1.1.8, 1.1.1.94
Use Curated BLAST to search for 1.1.1.8 or 1.1.1.94
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (419 amino acids)
>mRNA_6208 K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+) (Rhodosporidium toruloides IFO0880) MSQNKQRKEGGQDGSDDETDKEGDDGEKERRPSLGESLSRKGSLKAPLPRRGSSPALAPF LAKYDEFTGSPSGKLEKICVIGSGSWGTALARLAAQNAAEKDGFDEEVRFWVRQREIPGK GLLTDIINETHENARYLPEMKLPENLVAVPSLTECVKGATLIVFCVPHQFLPPVIKELSQ PGVLEKGARAISAIKGIDVDVKTAEIYTYPSIIEKKLRLPCSALGGANIALEVANEEFCE TTIGCPGPEDCALWEAVFSTAMFRVHAVEDVAGVSLSGALKNVVALAAGFVDGLKMGGNT KAAIIRIGLLEMSAFTLEFFPSASAHTFSHHSAGVADLITTSFGGRNRKCAEAFVTSGKT FDELEKELLNGQKLQGVATAEEIYAFLKARERLDGYPLFTKVYQICKREISPEAIFEGI