Protein Info for mRNA_6235 in Rhodosporidium toruloides IFO0880

Name: 14603
Annotation: K17279 REEP5_6 receptor expression-enhancing protein 5/6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 transmembrane" amino acids 37 to 68 (32 residues), see Phobius details amino acids 88 to 115 (28 residues), see Phobius details PF03134: TB2_DP1_HVA22" amino acids 69 to 144 (76 residues), 90.8 bits, see alignment E=2.2e-30

Best Hits

Swiss-Prot: 49% identical to YOP1_USTMA: Protein YOP1 (YOP1) from Ustilago maydis (strain 521 / FGSC 9021)

KEGG orthology group: None (inferred from 49% identity to uma:UM06393.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (165 amino acids)

>mRNA_6235 K17279 REEP5_6 receptor expression-enhancing protein 5/6 (Rhodosporidium toruloides IFO0880)
MATAQQKFDYYISQVDKELSKYPTLNRLEAQTSIPKAYAVLGVGALFSTFIFFNIFAGFL
SNLLGWALPAYFSLKALESPGHDDDVQWLTYWCIFGGFTFIESLISVVAWFPYYYVVKSL
FILYLTLPSTRGAIVVHDKLFKPLLVQRKTPATSTTTTTPVAAAQ