Protein Info for mRNA_6248 in Rhodosporidium toruloides IFO0880

Name: 14616
Annotation: Interpro GET complex subunit GET2 0

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 368 transmembrane" amino acids 169 to 189 (21 residues), see Phobius details amino acids 239 to 258 (20 residues), see Phobius details amino acids 292 to 306 (15 residues), see Phobius details amino acids 317 to 339 (23 residues), see Phobius details PF08690: GET2" amino acids 114 to 335 (222 residues), 30.7 bits, see alignment E=1.4e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (368 amino acids)

>mRNA_6248 Interpro GET complex subunit GET2 0 (Rhodosporidium toruloides IFO0880)
MSSETLSPAAQRAAARQAKLLAKGKERLDKLTGAAKGEGRVVSDSVGGIAPRPANVNPPP
PSTLADVNQDDDPAEVDLASQSPLALFGGGGPAGAGFPGAGAQNPFAAGGAGGDDMFSQM
LSQMMAGAGRPQAGAGGAGAGPAAGANPFMQGPPMSPFPPAPKTFLDRIFPAIHLLAMVG
LAAYVVVVYEPAKRLAEYGWTGAQDGIDWASWGALISRQPREVGVVADAIGLHGLAEVPL
LWMFVSVELVLQTTRLFLLRVRTEYSCERVCLSLTCPWRPQNRPAPPGIISSLLPMLSQF
SPQLALAIQTGVRYLDIFSTFLNDLGVLIFCIGIVALVGRWKTGEPTGFVEVLADKTSEM
LTRASEEL