Protein Info for mRNA_6252 in Rhodosporidium toruloides IFO0880

Name: 14620
Annotation: K10845 TTDA, GTF2H5, TFB5 TFIIH basal transcription factor complex TTD-A subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 73 PF06331: Tfb5" amino acids 1 to 67 (67 residues), 99.1 bits, see alignment E=5.6e-33

Best Hits

Swiss-Prot: 60% identical to TFB5_USTMA: General transcription and DNA repair factor IIH subunit TFB5 (TFB5) from Ustilago maydis (strain 521 / FGSC 9021)

KEGG orthology group: K10845, TFIIH basal transcription factor complex TTD-A subunit (inferred from 47% identity to cgr:CAGL0K10098g)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (73 amino acids)

>mRNA_6252 K10845 TTDA, GTF2H5, TFB5 TFIIH basal transcription factor complex TTD-A subunit (Rhodosporidium toruloides IFO0880)
MVKATRGVLVTCDPAVKQILLQLDENAGRHRFIIADLDETHVLISPDAVERVKDELEEAL
EANHWNPLAVEDQ