Protein Info for mRNA_6254 in Rhodosporidium toruloides IFO0880

Name: 14622
Annotation: K20477 RGP1 RAB6A-GEF complex partner protein 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1088 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF08737: Rgp1" amino acids 452 to 902 (451 residues), 297.9 bits, see alignment E=8e-93

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1088 amino acids)

>mRNA_6254 K20477 RGP1 RAB6A-GEF complex partner protein 2 (Rhodosporidium toruloides IFO0880)
MAPQPGLSVTVSPSASAFFAGEVFTATITFRNTHPPVPEPSTSTTPHPSSPAQRSPYASP
GHARTASSVQLGSWRTSANQAGPGRDAWPRQNQSPASPPSFGRTASSGHVSHPSLSAAAS
ASTTDLVSPPTSPRRPVFSSTSSTGSLRPPPSTTNSPSSPSASSSAPSLPTRKGLIGKTP
PPPPTLSLAVPPSRGGGLYANGPRRPELLGGGHARAQSMAVSSPDLLLRNGQGTANGEAG
GRNFTAPSGPPDGGRLAGGHAKSRFGGSVVGGGLAGQPSEDDLRAIGQQDRAPLIAEESS
PVDRQQPNFPDDAAFPVSESSSAPAPPHFPRRPTFGHQRTPSNLPYAMNSRARVSSLTLA
SDDSDSDYDADEANTSGNGFYGMGQNDTMESVLEAKYSRHAMQKAGPLTNRIASAPSAFL
RPVQDRNRAISYGHEPEPSSPSLLHPPNTLAVLWAFAHLEGTFEVDESLIKPAEFLEVKR
LLAGGTGGVGVGGGTLEDRRTGGGWREWLGWGRGGANQGGSAGPGAGAGMAAEDPRGAAS
LEERKDRAIKDRSVPTLSCPPCILAVDLVLQPGQSKSFTFSIRIPADLPPSFRGKAIKFN
YYLVVGSNRISLGPISLKHATDDVRPVPKAQGKPSVSRVMRVPIRVYNHVGVTGARPFYD
LTNPVIFQRDEAITADVQDKKETAVAVTKLQRPDTGKDDFESYAVNLLSSVASNSPEIVQ
NPSLSPTLEATRSPTLMEAPPSLRPEMSSHRGGGGKAIEAFGLDVDEAEGCKAAVEIVSR
NSQKVSYDINKDGYQVASLTLVKSAYRLGETVNGSILLNGGEGRVLRVSARLETHELVET
SISTMPAPRMRQITRRLHAEHHEMTLDAARLGFALAIPSGATPDFGTSGVKLQWSVRLSF
LVIPPSPEASAGATPNITPRRLAAALGASGSGGRSSPNGGTSTPPRHGRSKSFAYGFEPA
VPVTLPPPPPIPPSGAAHLMPVPPRAGEPTPVRHISYRAVPDLGYVPVLFSSAMPEPPPA
PGPLQKAASGAHHRPTPSMSLARGQQSPFGNGSAVLVPAKVETVECSIPIKVYPGNTPFR
PTITVFDA