Protein Info for mRNA_6259 in Rhodosporidium toruloides IFO0880

Name: 14627
Annotation: HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 482 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 460 to 481 (22 residues), see Phobius details PF01522: Polysacc_deac_1" amino acids 180 to 296 (117 residues), 100.9 bits, see alignment E=2.4e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (482 amino acids)

>mRNA_6259 HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713 (Rhodosporidium toruloides IFO0880)
MRAALALAVASGASLAVACGTEKEFALIRRNAIERRAAASSALASAPAGAATVATGPAAA
APTVPTATRTDEASAAKVTNPAQECQVYSYPPVAALQAQKVFPPIWQIANLSTAQPEVVS
LFNALNGSIPKINPKGTPTGDFTGVNYNGAEDPDCWWTWKQCHTPKVAGLPQDIYMVPEP
QTWGFTLDDGPNCSHNAFYDFLNEQKQKATMFYIGSNVLDWPLEAQRGLADGHEICAHTW
SHRYMTSLTNEQVFAELYYSKKAIKDVLGVTVQCWRPPYGDVDDRIRYIANSLGMQTQIW
RDNTFDYEIATLPRAQIEANYADIIKAGQNGTFATNGTIVLTHELNNDTMALMMENYPKI
KAAFKNVVPIGVAYNNTQPYVEKEYTYPNFSQYVAGTLSVSLAAPTAVSTDASLSIPLSS
GASGSISATVSYASNTATGGSAANAQSSGKSAAGRNVEGGVFGAVVAAIVGAIGAGAMAV
LV