Protein Info for mRNA_6269 in Rhodosporidium toruloides IFO0880

Name: 14637
Annotation: KOG1336 Monodehydroascorbate/ferredoxin reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 381 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF07992: Pyr_redox_2" amino acids 3 to 305 (303 residues), 112.4 bits, see alignment E=4e-36 PF00070: Pyr_redox" amino acids 148 to 217 (70 residues), 33.8 bits, see alignment E=6.3e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (381 amino acids)

>mRNA_6269 KOG1336 Monodehydroascorbate/ferredoxin reductase (Rhodosporidium toruloides IFO0880)
MKNVLFVGYGPSAVQAAKDLVGSLPADYRIVAITSNEGYWPPAALRAAVVPGWEDKPLAC
VDAAFPQDGRHVMLKMTNVVELRKNSVVVDKAHPDLGFEADEIPFEYCVLAMGSKYPYPC
RPHPSSSFSQTLDDLRQTQSEVSRSQQILIIGGGPVGIEFAGEVASHYGKGTKEITLVHS
RERLLDQSGWKEKLGRSLRGQLEGYGVRVVVRRKVVDAPEKTGRIEGGREFHLDNGEAIK
ADFVFLATGNAPNSDLVASFDSSVLNDSKHIKVNSAFQVEGYEHIFAMGDVTDVKEGKQY
AHAKNHGSIVASNILALIQSPSASTASLKSYKPGSNLILVSVGPWGGAGQIFGFVPGAWF
SALVKSRSLFVSDFKKLYNVA