Protein Info for mRNA_6282 in Rhodosporidium toruloides IFO0880

Name: 14650
Annotation: HMMPfam-SET domain-PF00856,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-SET domain profile.-PS50280,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SMART-SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain-SM00317,SUPERFAMILY--SSF48452,SUPERFAMILY--SSF82199

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1449 transmembrane" amino acids 740 to 758 (19 residues), see Phobius details PF00856: SET" amino acids 265 to 443 (179 residues), 43.2 bits, see alignment E=1.2e-14 amino acids 1056 to 1235 (180 residues), 33.7 bits, see alignment E=9.9e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1449 amino acids)

>mRNA_6282 HMMPfam-SET domain-PF00856,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-SET domain profile.-PS50280,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SMART-SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain-SM00317,SUPERFAMILY--SSF48452,SUPERFAMILY--SSF82199 (Rhodosporidium toruloides IFO0880)
MAQPDLAKVLDAIRRAGMDTSQCRGIIYDPELFNNLLKDVQISKAVNAFPTLEKAFSTLL
ATHGMQGLMPTGGPTLSEDAYHFMPPQVPVDKLPDDFDFKGLGNELFTLRRDAEAVKAYT
EGLARNPSVELRLVLRLNRAQVHLRLENFASAYHDSSFVLKELDEGVPGPSQARLKATLR
LARAFKGMRHLALALEHFAKVIELDAGSKEGAEGKKRIERKLRETNEGEYDWRELEKQAK
TSMRLDVGDFVGPVKLVKLEGRGGGRGLVATRDIQAGELLIVDKAIVVGEPNDASDPSKA
FLFGGQAAWQLSMYQSAQRLASLLKEDPSLAPFVYSLHSRVQPATYDLAFESLDHRQLPQ
EDDSVQLDKLRLESICSTNGFQRCGESLERASSALDAGSGLHLRMSLLNHDCVPNTVIQG
LRDVKIARARIHIKEGEEVCLRYIGPIHSRRPCILAGHFPDGCKCAYCLDEALDSPAQVE
QRKALLGNDTELGKHLRQLNTLKDLSPDFVLRFIDHIARVERTYSDKRVFRLDLIEVYRA
MSDLCAYSTVPAMHLAIKYRLASLEVAGLLVREDDEDGIRIAEIPFEDEDGAVPSFLKVA
SYFTSLDDEKNNARKWAITAFEMSKTLYSDDWDRFVERHHADVQKLGLDGLLEECRDPSR
FDQFSSFRIASLCLLQQRLRLILTPPQRSKVLSPHSFSIRPRVLASFSCNAAFPLSSLRV
QVGRLSWLRDSFESRENRGSFASLPLTALLMFAGLRARPFARTGLLHRPLLVVPSPVRSA
PPAALMSSRTTSGDDYPILGLGIDTRTLQSTLRDPDFKCVCAANLSLEDLQGQTAEERAT
VYAKVALGMHGTNFILVVPGQVKNTNPRPGSIVEQIPGFTIDELPDEFDFCALGNRYFQQ
GDLEIAVKIYDEGLTRDVAPEVRLLLRHDRSQAHLRLANFASTYHDSSFVLKQLDEGVAG
PPNAKVKATIRLGRAFEGMRHLTLALEQYKKALDLNAAANEAAEGLERVERKIRESEKGD
YDWRKLEQVAETETRLDVGDFIGPIKLVNMEGRGGGRGVVATRDIEAGELLLVDKAIAVG
DQHDASDPSRFFRFGGNRAWQLSLYQLAQRLAHILKEDPSLVPFVHSLHSKVLPASSDVA
FGSLDDRPLPQEDESVQLGTIRLEAICATNSFQRRAELPERSDGSTLDSGSGLHLRMSLL
DHACVPNAALGEIRDVKIARARVPIKQGEEVCLCYLDPLDDRRPYILAAHFPDGCKCAYC
LDEKYDTEEQIAKRNELHDKTSPKVSQVNQQLSEGLSPEVFAPILDFQDHVAALELTYSP
MRSTFRPHLACACLFFAAICRNAWSFDAADHYSLEYLRFAGAIVKEHADRIEVRAAPAFE
GSIAPTELISIAGHHARVKGDSVKGRKWFSAAAEMSRIVHGDDRDAFVDRHAEHIKRCGL
DQLLQDPKP