Protein Info for mRNA_6285 in Rhodosporidium toruloides IFO0880

Name: 14653
Annotation: K05610 UCHL5, UCH37 ubiquitin carboxyl-terminal hydrolase L5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 PF01088: Peptidase_C12" amino acids 4 to 208 (205 residues), 210.4 bits, see alignment E=2.7e-66 PF18031: UCH_C" amino acids 253 to 296 (44 residues), 44.9 bits, see alignment 8.8e-16

Best Hits

KEGG orthology group: K05610, ubiquitin carboxyl-terminal hydrolase L5 [EC: 3.4.19.12] (inferred from 42% identity to isc:IscW_ISCW000206)

Predicted SEED Role

No annotation

Isozymes

Compare fitness of predicted isozymes for: 3.4.19.12

Use Curated BLAST to search for 3.4.19.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (315 amino acids)

>mRNA_6285 K05610 UCHL5, UCH37 ubiquitin carboxyl-terminal hydrolase L5 (Rhodosporidium toruloides IFO0880)
SAGWSLTESDPGVFTGLLHELGVRGLEVEELWGLDAQLLQDLEPVFALVFLFKWVGHGDP
EKMDGKLEEPAGPYYFAHQVINNACASIALLNATLNIRDPNVQLGEELSNLQLFSEGLDP
ETRGWTISNSEKIREVHNSFARSDPFHLEENRPQDEHEDAYHFIAYLPIGDKLYELDGLK
PMPVSHGEIPGGREKWTDMAREVLERRIATYPAGEVMFNLLAVTGRRTALQKRLAELEAA
DQSSGDVQAQLVDVRDKLQGIEERLKDWEVENTLRRHNYIGLVHALLLESAKQDTLKPQI
EEAKQKMKQKIEEKR