Protein Info for mRNA_6295 in Rhodosporidium toruloides IFO0880

Name: 14663
Annotation: K11593 ELF2C, AGO eukaryotic translation initiation factor 2C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 872 PF16486: ArgoN" amino acids 20 to 164 (145 residues), 80.4 bits, see alignment E=4.2e-26 PF08699: ArgoL1" amino acids 177 to 223 (47 residues), 39.1 bits, see alignment 9.3e-14 PF16487: ArgoMid" amino acids 427 to 493 (67 residues), 28.7 bits, see alignment 2.7e-10 PF02171: Piwi" amino acids 518 to 821 (304 residues), 243.9 bits, see alignment E=4.9e-76

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (872 amino acids)

>mRNA_6295 K11593 ELF2C, AGO eukaryotic translation initiation factor 2C (Rhodosporidium toruloides IFO0880)
MTLGDEHDPMLRPGYGTVGKPFSVYTNAYEIRTPNLVAYHYDVKIKPDKPVTPPRLNREI
WRYLDQTLNAFNGIAVAFDGRSMAYSPKKLPADEGQWNITLPDEDGGGGGAGAGRRTFTV
QIKYTRPIDLARLGVFVRGEGIGDPSFPDQSQVQSAIQALNVLIQHGPTLLYPSRQASFF
LPPMNQEQASIARGLEVWRGFFTSTRLGPGRVFLNLDIASQPMVQSGNLPRVVLNFLRGT
NRNLTEQHLDAKTIPSSEYIRLGRFLKGLKVKLTVKDADGIEPTRKIRGIEGHSANDPAH
AFQIDGTSYTIASYFEQFYGVKLRTPNFPVISVSKVARWPLELCVVEAGQKWTKKLDPEQ
TVESIRLTTVAPRERLKNLAEGIKRIQPSDAALGQWGISIDQKPLEAKARLLTPPTVNFK
GRAARINNGVWDVRGHQLYTSARIERWLVLVLDSPQYFQIDAAQTCIVGLVAACQQMGIT
YAEPRPPIHYAPRGADTAAFMREKGMEMMQDQGGPPQLIVCFLPRKPCSEYAEIKKFGDQ
QVGCATQCLYEIKAKRGSPGYWQNVALKISVKLHNGINWILNPQDLGPIAEKPTLVMGAD
VSHAQPNSVAPSVAAIVGSMDQTCSIYGSAITVQPSRLEVIARLEEMVLKLLRQFLKRNG
IPPERIFFFRDGISEGQFPQVIATEVEAVRKAGQRFGAEHNQHDYAPKLTFLCCGKRHHV
SLFPSQTAYGDPKTGNVKSGTVVDTEIVSPFHFDWYSMAHQPLLGTGRSCHLTVLRDDSN
FSADQLQQLTFNLAFTYAKATRSVSVPTPAYYASRLCTRAQLLLKREDEDTTTVISSTSN
SSDERLRQQALAEYSSRLKAIHPNHEETLFFM