Protein Info for mRNA_6298 in Rhodosporidium toruloides IFO0880

Name: 14666
Annotation: K03842 ALG1 beta-1,4-mannosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 498 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 102 to 134 (33 residues), see Phobius details amino acids 140 to 155 (16 residues), see Phobius details amino acids 180 to 199 (20 residues), see Phobius details PF13579: Glyco_trans_4_4" amino acids 52 to 220 (169 residues), 31 bits, see alignment E=5.2e-11 PF00534: Glycos_transf_1" amino acids 333 to 449 (117 residues), 27.6 bits, see alignment E=2.9e-10 PF13692: Glyco_trans_1_4" amino acids 337 to 449 (113 residues), 36.2 bits, see alignment E=1.2e-12

Best Hits

Predicted SEED Role

"Chitobiosyldiphosphodolichol beta-mannosyltransferase (EC 2.4.1.142)" (EC 2.4.1.142)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.4.1.142

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (498 amino acids)

>mRNA_6298 K03842 ALG1 beta-1,4-mannosyltransferase (Rhodosporidium toruloides IFO0880)
MWGIETLLSTLAGGISLLVLFRRIQSTRPSLVPKSVALVVLGDIGRSPRMMYHADSLARN
GYTTHIVAYRGSAPSKHLSENPHIRFVYLPTPLGWVTGLPRPLFLLCLPLKVIVGAWDLL
RALVSIQIAPAFLFVQNPPAIPTLIVIKLAAFLRGSKVIIDWHNTGYSVLALRLGKRHPV
VLLAKFLELLFGRLAYAHLTVSDAMKHELIKEANLRGRVVTFHDRPPASFRRLEEHEAHN
LFSRLPSLNSLSDWEPAFEPDSTLFTTSSGSLRPDRPALLVSPTSWTADEDFSILLRALG
LYEVAARKFAAGEGGLRDSHGQVIPLSGKKAARKLPKAVVLVTGKGAGKKAFEAEVERLE
KKWNWVRVRTEWLEREDYPRLLGSADLGVSLHTSTSGIDLPMKVVDMFGCGLPVLALDFP
CLGELVKDGKNGRSFKTAEDLADELITLLLGFPMPFPSDIDILRVGIKDCKYGGDEPGQE
WESWEAHWDRIVAPLMAP