Protein Info for mRNA_6307 in Rhodosporidium toruloides IFO0880

Name: 14675
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1177 transmembrane" amino acids 510 to 530 (21 residues), see Phobius details amino acids 624 to 640 (17 residues), see Phobius details PF00172: Zn_clus" amino acids 262 to 292 (31 residues), 24.7 bits, see alignment (E = 1e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1177 amino acids)

>mRNA_6307 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MDELLDRWFASTGTGTGNSTDSVQSPHAAHGDSHDEVMMGWQRCHTPRGVQHHTERPASS
ASFYYTLPTPPTTHDSRTTAESRPLSSRHLLPPALPPATEQGRAPHLDSAGVIFITSPVA
PAPETASRQSYHTLDHPSSHTKHPSLPAWPLTPPAQSDYQLTDISMSSDGGAGSSGDQGT
TPSARMETDPLFPPPPVGARRRSRTAGESGPVRGIVGQAAEEQAAVDRGSATAAAAGAGG
ASSSRPAVAALAAAVGPKTTEKSCRNCRTRKVKCDRKWPRCQRCKDRKEECDFGSFVPVD
AIPVAALQGAMTARSPSDGGDRENVFALQARIANLEAELEALRAPPAASGSNLARQPDPR
VRKGSAASGSNEQMGSGSNSSASGPSRRQSVPVVPYPHVAGAQDFSSRVPHPGSPGSLVT
LTESLSAAFELGAGLREPGPEGEQRGRTVEVYLRGVAMHNPELYSLAAKGLGPIPDRNRA
GGIGRADQGLPTISEEQPEWRLARAWMARTLVVHLILFFYNSCCAYLPAFSSWHDRRDWL
INNVDNLDPASRVVATAFCAMGARASPHSAILGISLPSPSPTDCFEEASIAGHRREAACR
ALHNHAFDLMHSLGILYDFSRENLEALLVLIQMLIFNELMPQRSRSLMLFALGQYKELQD
SALPPGFKEETRKEIGLPLLENDSVTAAYARKKPLISASDLEHYFPAYLHPDTNKDNMQS
IVQDCLRDTLASDGRLTHEGVSDAANIVQAWISHSHRLFAQVAAPQPGGPPSTLVDDIRK
LWTMLDQIHEGIRKVQEMLVQLSYVPQGCQGDGCTDEHLRFITRLDKDLLDTLFLIHSLV
TENLGLDSLIGDTAQATYVESDKRVRKALKLIAFYLELYLTSRDPHLTYHVIFSLEILPN
WTAIAVQRFGETDGPLSPDLELTDEELDWIDKGLVVGSYYHPIANGRLQELKQSRRPSYR
ALRFPIHALLRSLMDSMVCTQAPSRTPRPPPPSNRPSPPPSQPPPPNPLRVPRPSLPRSP
LTHPNRLSRTSPLLTGPTTPTRPPLPVSTALLRRTISPSTMWWIISAMKRLVSEEEWWEE
EREEREREREGRGRSRPRLRLRLLRRRGRFRTPAAGTQEEERGTSTMRHPEQQREEERSA
STRRPYLSLAPRTHILTRTSRTRTRRLMGLGTSSRVE