Protein Info for mRNA_6311 in Rhodosporidium toruloides IFO0880

Name: 14679
Annotation: K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 846 transmembrane" amino acids 248 to 270 (23 residues), see Phobius details amino acids 395 to 415 (21 residues), see Phobius details PF01909: NTP_transf_2" amino acids 196 to 303 (108 residues), 43 bits, see alignment E=4.5e-15 PF03828: PAP_assoc" amino acids 429 to 487 (59 residues), 62.8 bits, see alignment 2.8e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (846 amino acids)

>mRNA_6311 K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7 (Rhodosporidium toruloides IFO0880)
MASEQSLPSGNAASTSSLANSKGPSRASTSAEGTPKPRQGTLATRLLQNQLNAANKEAMT
PKGKGPATTEGPPDSTSRAQFEGQEDFISFEASPSPPPQTGSAGGRGTPRDGVPGSRRRG
GKRKHDEVDEEELEESSRRLRDREKARSTPWCEDPGVDWRKHETSIDQFNAECRAFVTYI
SPTPIEHQLRLWTIELIRRTIKSKYPDANVQCFGSVGTGLYLPGGDIDLVVLSSSMPSPP
LKPSSSLLHRLASLLLTSSIVAPQSLVVIAKARVPIVKFVTRYGGFSVDLSVNQKNGVDA
AVRVRSMLEEYAFREEGYVEPGMADLSGSSKGKTVSKGKGKQRASPEEGEEADSDEDEEG
QLRGGAEPHPVDHGVARSMVLLVKAFLAQRGMNEVFTGGLGSYSIICMVISFLQLHPKIQ
TSTINPNRNLGLLFVEFLELYGKHFNYDQAGITLRGRGGYFNKHDKGWFRPQQPYLLSIE
DPNDPQNDVSGGSHAILRVRQTLAGGFDTLAAWLIQRHSLLASRSNPSLVALSASALPNA
DSDPPSRMSQSLLGSVIGLSKHDADARDANVRLWEGGVLQRLLDRTDPIKGAGAGLSKKG
MKKMQQEARDREKRERTIARLERKMEEKEKKSLRRKEKKAARKAEKAATEGGEVLTIQPL
VDKSAIEDAKAKEAALEALAPHATAQDDEDDTSMGEAGFVIDTTGSRSAAVSDDEESDSR
YLLGVPSVATTSTSSRNVYTHVTDDSSASDDEHGSDGDVVLGGFGGDFVRHDGSVEASRA
TSKTGSSVDSDEVVEALIVPPAKRVKKAASDNGQAKKKKKSSQDKADARMAFWAAKGRKE
TGSDSE