Protein Info for mRNA_6312 in Rhodosporidium toruloides IFO0880

Name: 14680
Annotation: K10754 RFC1 replication factor C subunit 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 944 PF00533: BRCT" amino acids 186 to 261 (76 residues), 53.4 bits, see alignment E=5.6e-18 PF03215: Rad17" amino acids 301 to 403 (103 residues), 33.1 bits, see alignment E=1.1e-11 PF00004: AAA" amino acids 356 to 489 (134 residues), 42.1 bits, see alignment E=2.3e-14 PF08519: RFC1" amino acids 637 to 793 (157 residues), 203.7 bits, see alignment E=3.8e-64

Best Hits

Predicted SEED Role

"Replication factor C large subunit" in subsystem DNA replication, archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (944 amino acids)

>mRNA_6312 K10754 RFC1 replication factor C subunit 1 (Rhodosporidium toruloides IFO0880)
MAPRIQSSDSEMEIQETKPSTSTRTTPARKRKSVAPVVTLSSDSEGSSEDGKPAIKKKKV
DGGKAVATNGKGKGKAAATKGKKKGKKEESSEYEGESASSEEDEQDEGDEEEEEDVKPKK
KVAISQASKPKASTPAKKAAPAPKKKETKPAVDDDAKEEKPKFKWQPKPRAGPAAPGSKD
IPEGAPDCLAGLTFVFSGELESLSREEAQDLAKRYGGRVTTAPSSKTSYVVLGSDAGPKK
LEVIKKHQIKTLDEDGFLALIGSRPANPDDPKVKEARKKEEAKIKESAKSLTLAKDAPEH
MTQLWTTKYAPQKLNDICGNKGAVEKLRKWLESWPKNVASNFKKPGPDGMNIFRCVLISG
PPGIGKTTSAHLVAKLEGYDVLELNASDTRSKKLLEEAFKSKVTDATLSGFFKKPGEEHD
PSTGLTVNRKSLIIMDEVDGMSAGDRGGVGALNQFIKKTKIPIIAIANDKSSQKMKPLMN
TCFQMSFKRPSAQEIRSRIMSIAFKEGLKLDAKVVDQLVAGSNSDIRQIVNMLATYKLSA
KAMSYDEGKKLAKMNEKNTIQTPWTLYSKLTGPQAFSPVSGMTLNDKVEIYFQDHSIMPL
FVQENYLKGDFARARSENGPGKQLKRLELMQKASESISDGDLVDAMIHGAQQQWSLMPLH
GMLSCVRPASFTYGSGGGYPSFPAWLGKNSTQGKLGRQLNEIQIRMRLRVSGDKREIRQS
YIPTLFPRLVQPLVDHGTDGVEDVIKTLDQYYLSKEEWDAIVEMGIGEGMGQEEVLKKIP
AQTKSAFTRKYNSSDHPIPYYKPDGGKAKAKKLAPAGEAPDLEEAFVRLVLYNASTNASL
SFISHATRRSTKTSTRRTLRMKQPTRTLRRAMLARTSLSRRRKVRALQQRRPRQLRAQRR
RRKGRRPRRSEWIGRCRGGLGALVHVWGSLRLACRSVCCSRSLV