Protein Info for mRNA_6326 in Rhodosporidium toruloides IFO0880

Name: 14694
Annotation: BLAST secreted protein [Melampsora larici-populina 98AG31]

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 44% identity to lbc:LACBIDRAFT_247023)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (246 amino acids)

>mRNA_6326 BLAST secreted protein [Melampsora larici-populina 98AG31] (Rhodosporidium toruloides IFO0880)
MRNLALLLFFLLPPVQPVPLEPPAQLVLSPDATINVDTASPLSQRARSAYYDVRERGGSM
LNRNRWKAGEPLNVIVSAQSSTGVLSESGFIAYSRSLGLWNECANLHFGDPQEGNLGDGK
GWEQELFVMRESVWPFPIVGACLESVTGGNHFRAYRQNGTQANSGAWFLAASKELDLRGK
HKIIPNGYNIGRDWIVEQAVRGTWYLNRRYSAQVEWLDGLLEPGNKGIAHGIAQDGRVAL
LTVRQY