Protein Info for mRNA_6342 in Rhodosporidium toruloides IFO0880

Name: 14710
Annotation: KOG0756 Mitochondrial tricarboxylate/dicarboxylate carrier proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 transmembrane" amino acids 67 to 88 (22 residues), see Phobius details amino acids 101 to 122 (22 residues), see Phobius details PF00153: Mito_carr" amino acids 13 to 88 (76 residues), 27 bits, see alignment E=1.7e-10 amino acids 210 to 311 (102 residues), 48.2 bits, see alignment E=4.4e-17

Best Hits

KEGG orthology group: None (inferred from 56% identity to lbc:LACBIDRAFT_291635)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (318 amino acids)

>mRNA_6342 KOG0756 Mitochondrial tricarboxylate/dicarboxylate carrier proteins (Rhodosporidium toruloides IFO0880)
MAPQKSNGLSPVNLAIGAGVSVFEVTTLGQPFEVLKTHMAANRHDSLREAIRKTTARGGV
RGFYQGLIPWAWIESSTAGGILLFTSSYVESFTMDHGIKPGAAGLLGGIIGGAAQAYLSM
GVCTRMKTAEITRQKIAAVSSVPGQPAPQAPSTMGVFMDMWRKEGIRGINKGVNAVALRQ
ATNWGSRIGVARAAEQAIKEFKGKRKSDALSPGEKVIASAVGGALGCWNHPIEVIRVEMQ
SLVSPAKSAATASSAAHPQNPTILSTAKYIYQESGIRGLFRGVSPRIALSVWRTICLVSL
GDYVKEIVKKDVAASVPE