Protein Info for mRNA_6355 in Rhodosporidium toruloides IFO0880

Name: 14723
Annotation: KOG4532 WD40-like repeat containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 754 PF10313: DUF2415" amino acids 340 to 382 (43 residues), 37.4 bits, see alignment 1e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (754 amino acids)

>mRNA_6355 KOG4532 WD40-like repeat containing protein (Rhodosporidium toruloides IFO0880)
MQPSSSLVRPDPYSVRATTTSSHPQLRDLLVFTPEAGNAVTTVCYDSLCSVDLYAARPPE
YTPLRFSPSTLAYGMGLVVAGGQSSELAIRSALPGSDWCHQYLPSSSVPSATGVRTIHSG
CINNSVCVTPSPNSPDTPRLLVSSNDELIKVYEVEGRVPDYKAAKRRRERERRAGWSVVE
ATWAAERGELEYGLSGEEMEDEDNAVEEQPSYDEGSACRIVALPSEDLRLPTAVNHCSVS
RDGKYMVAVGDTADVFLYDCRGGRYELAQTFKASDDASFSTDWSDDGLTFAVASQDGFVH
VYDIRNLPSSSRPPSPTLRGASASPRKLAELKTTQPGPAGAARKVKFSPGGKRIDGGLLA
FTEHRNRLHIVDARTFETYQIIDVPTSSPSASSYPHILSAAPPLRPRPQPPPRAYRRFRP
SLSRIPSAFSSLASFSASGGGSGTHTPRDEKERDEFEREMRERTERRLRDEERRTRDVGR
ELRRQTRLQRQRLLTEDGEGLGEEEGGEDRDGDEGGEMQVDPYDELDDLMRTEEQGDHDE
ERSDGEGDAHEEEDEDEDDSGASSVNTTRPRRFAPATAAPDSAAASRTLPTASMSPFGAS
TTNVSLTADDPPVRRNFSGYTPLNPNSSVPARIPTYASPPHMSTSPSGRIGTSSSFYYST
YVPTSYPSATFSFATSAPAPNLPITSLFAAPLAGTGGTYHSTSAFFPLDATPGDLLGLDF
DEFGERVFVATGERVWEWEVDARARRGSGAWGTL