Protein Info for mRNA_6362 in Rhodosporidium toruloides IFO0880

Name: 14730
Annotation: SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 626 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 60 to 78 (19 residues), see Phobius details amino acids 109 to 134 (26 residues), see Phobius details amino acids 150 to 172 (23 residues), see Phobius details amino acids 184 to 203 (20 residues), see Phobius details amino acids 238 to 265 (28 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (626 amino acids)

>mRNA_6362 SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665 (Rhodosporidium toruloides IFO0880)
MSSPSRLELLFHLLVVPLFSQPSQRTSTRRLARLSSCSKERAEEEEGREEAPPGPWTFRT
LPPSLFLYLLPTYTLRVHYEPARMPTARPLGSQAPTDTEHSSSGRYATLIALHGMLGFLA
FQVVAPAAAIVAAVGKGWSNGLWFRMHWKIQVFVTVPTVTLAITVAVIAASMDDRTRVYD
KHRTTGFVLLGVLILQLALGYYAHSRHQAVTTFATSSGLPAPPPKRRVANWLHMGVGVGL
LTVGGLQVMWGLAGVPPLIVTPYILIRGIKRLRAGHSFTESFFSTPPSSQPYQPPRKLFL
GTSTYIDEAYAPGAETVLDADADVEKDGVGHEYAKGKGVDGRVQVESSWPGAATRKEYEH
EVQSSIGHGSVVGSTIGGESTYDDYRDRREEEEVSLIKRAAPIARLPSPGADEDEGRPTV
SPPSVGENLTFSPRLSFTPFAGPDVINPPTLTLATSPSPALSTTEAVLRDQPDGEGQSAK
TPTLVPTPPLPSSAQDKADVRATDTASPAPQLTSDGVLFTVERRPSQVAKVEGEASNQEV
KPAAQEETVVEEDEDDDVILADDSESTRLMDELERELTISPMRSGRSRAAPAEEEKLAEV
GESAKEEPMLEREQSGKWFGNGRAAS