Protein Info for mRNA_6363 in Rhodosporidium toruloides IFO0880

Name: 14731
Annotation: K14553 UTP18 U3 small nucleolar RNA-associated protein 18

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 781 transmembrane" amino acids 66 to 78 (13 residues), see Phobius details PF00400: WD40" amino acids 740 to 759 (20 residues), 12.3 bits, see alignment (E = 2.8e-05)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (781 amino acids)

>mRNA_6363 K14553 UTP18 U3 small nucleolar RNA-associated protein 18 (Rhodosporidium toruloides IFO0880)
MGLSRLSAIASPASQAGNRLGDVLRHSRFQDVCRTCIRRKKTHSGSVDPLSTVVSSASPP
ITSLGSLPVYLLLSWLYIDVLSPSISRTKRVSRVDLRLAPPPTSLDESLIALPHTTAPAA
AMAPAKRASSTTDPKLRKAKKPRTRKGKQRDDDAADEPQALGSTSLLARHAKAHEKDETE
LELEEAVFGKRSGQQEADLYGLAEEDLQGSRRDGDFVDEVDYEDEEDEETGLERLRDENL
FFVDVPPTASTSAADPAQVPLPSSPSDSFAKFDSEDEGASEEDSDEQDRQVSAPKPAMRT
RNLRQAAWFDPADEELQISLQGEKRLRKLRDAAAEDVVSGLEYESRLRRQFEKLHPPPQW
AVEARRKVLRRRAAQAQHGGNAALLLDSDVSDASDEEGDSADEKDEADDLFRKATVGGKG
GKKVKGGRLEPGEIDIERVRDANQHEQKSGAVVEVGFHPRAQVLFSATSDRRLRLFQIDG
TDNPLLQTLHLPELPISNAAFHPSGSSILLTGSRPFFLSYDLQTGQTLRSPRGLLNAGLG
GSDKASTGGAGGMERFRFSPGAGDVLAVGGRRGYVHLVDWSSSGVSRGGQVIGEVKMNVA
VKGIAWQREGRELLTLGEDSEVYVWDVGTRKCVDRWRDEGGFGSVALETSKDGAWTAVGS
TTGIVNLYDASSRGTYAQGAERKAKKAVENLVTSVTTMRFNHDAQLVALASKTNKDQLKL
VHLPTCSVYQNWPTQQTPLHHVTCVDFSKGSEWLAVGNQRGKVLLYEVKQFARGSKGRVR
R