Protein Info for mRNA_6384 in Rhodosporidium toruloides IFO0880

Name: 14752
Annotation: K13201 TIA1, TIAL1 nucleolysin TIA-1/TIAR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 PF13893: RRM_5" amino acids 26 to 111 (86 residues), 16.7 bits, see alignment E=4.7e-07 amino acids 230 to 316 (87 residues), 10.1 bits, see alignment E=5.1e-05 PF00076: RRM_1" amino acids 30 to 101 (72 residues), 57.6 bits, see alignment E=9.4e-20 amino acids 122 to 192 (71 residues), 70.4 bits, see alignment E=9.2e-24 amino acids 245 to 308 (64 residues), 60.7 bits, see alignment E=9.7e-21

Best Hits

KEGG orthology group: K13201, nucleolysin TIA-1/TIAR (inferred from 67% identity to cci:CC1G_03708)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (406 amino acids)

>mRNA_6384 K13201 TIA1, TIAL1 nucleolysin TIA-1/TIAR (Rhodosporidium toruloides IFO0880)
MDAFPASVPPAYGQPSLLGPGGEPPKRAHLYVGNLSPRVTEYMLQEIFAVAGPVLGVKII
PDRSFQHGGINYGFVEYHEMRSAETALQTLNGRRIFDQEIKVNWAYQNTNAQKEDLTNHF
HLFVGDLSPEVNDSVLQKAFQAFGSLSDARVMWDMNTGKSRGYGFLAFRDRTDAEQAIQT
MNGEWLGSRAIRVNWANQKNNQGGGGGPGGGMGGPMGGGGGSGYSGTPSSYDAVVAQAPS
YNSTIYVGNLTPYTTQADLIPLFQGFGYIVEIRMQPDRGFAFVKLDTHENAANAIVNLTG
TMVHGRGLKCAWGKDRADGPAGAAPPQTGYGMYAPSPYAQPGPAAGAPAPGPAGAAPADP
AAAAAAMAEWQRQYGAQWAAYVQQQQMMAQQGGQPAPAGAAAQPQH