Protein Info for mRNA_6393 in Rhodosporidium toruloides IFO0880

Name: 14761
Annotation: KOG3823 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1002 PF09794: Avl9" amino acids 163 to 563 (401 residues), 444.2 bits, see alignment E=5e-137 PF09804: DUF2347" amino acids 165 to 495 (331 residues), 52.5 bits, see alignment E=8.8e-18 PF08616: SPA" amino acids 450 to 498 (49 residues), 29.4 bits, see alignment 1e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1002 amino acids)

>mRNA_6393 KOG3823 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MAAGGEQTGPPTDSSASEPASTSSSPTRSSTIPSSLNTASPEPEHRRGSVQMQDKAAKIL
LENLPDDDDELTTVPTLPHLSAASEDLTGEGGAGGVKRYSRVATTFPPSAQTEQPVASTS
STFLTSTRSPVLSSSTSSSASPSGAGMRRTTSSQGATIGAKVWGVCLVGFDHTLGPNIEF
TYPEDLRDNAELQKHLPFLALPDGAHARDEDYSYFHLLLPSVAPSQTIFGISCNRQIPAD
QLMNKGKEVTRSTVQKAIVVLASKPIFGALRDKLGVVTRSFFAQRDFNDKSILVDLFKSF
DSAQLDATRKGKGREEEGDVEGGEETSEIPSSPTAAERAEEETGGMYMGTSLRELVHRFR
FKTLMLLKLLVLQRRVMFYAAHTPVEQLCTFQYSLVTLIPALLTNLQDAASPLLDERVKR
MTKPSSLRTSDKYSLIKYLGLPLNIFGKGSFFQPYLPLQQIDLLKTKSYLVGTTNSIFQQ
QRDCFIDVIVNIDSATLDVLNPKLTPLITLTAADRKWMDEIVTLVDQSWNAADPSRPTTQ
GFVGSDDFIRAKFEEYVCSLLACVKFGEFLAKERGERAEMLLSAPELESYNPASFNEAFL
NAFKRTAAYELWDRTTDEAIFDLVEPKHPMEGKTNPIEDVGIRLVHGLHDSLSDVTLPNF
SQLPANLQNLNLAPLPMKARERLSKGWSSGMQAMEAFREDWAKRAAAAEQEGEKAGAGES
ANGTPDPLAPSAQPPPSPGVGQTFFAGVDVAKSGAATLATGLGSFLGAATRKASLFGGPP
SSTAGSTDVSPAQSTRTSLNPSDQPQPSSPKPPPTSTVHTPASLASFLRPLSTAAAATVP
TSPERPREPKLTPAPTTSPADPPSSQTTRSGFGGFFGGLRRTLSPLPSPAFGASSTPGTP
STGGVSGFGTPPTTSFLSVGGWGGNAIPSMPSTPGGSVSGLQSPALRARDIAGDLGADGS
DGEHGDDDGVKRRDQAASEADEAQKEREKTRRKLEGLAAESP