Protein Info for mRNA_6398 in Rhodosporidium toruloides IFO0880

Name: 14766
Annotation: K14556 DIP2, UTP12, WDR3 U3 small nucleolar RNA-associated protein 12

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1008 PF12894: ANAPC4_WD40" amino acids 72 to 149 (78 residues), 21.3 bits, see alignment 5.7e-08 PF00400: WD40" amino acids 93 to 127 (35 residues), 27.5 bits, see alignment (E = 8.5e-10) amino acids 442 to 473 (32 residues), 24.4 bits, see alignment (E = 8.5e-09) amino acids 519 to 555 (37 residues), 18.7 bits, see alignment (E = 5.3e-07) amino acids 570 to 612 (43 residues), 12.2 bits, see alignment (E = 6e-05) amino acids 622 to 654 (33 residues), 23.6 bits, see alignment (E = 1.5e-08) amino acids 702 to 738 (37 residues), 31.6 bits, see alignment (E = 4.5e-11) PF04003: Utp12" amino acids 854 to 955 (102 residues), 74.8 bits, see alignment E=1.3e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1008 amino acids)

>mRNA_6398 K14556 DIP2, UTP12, WDR3 U3 small nucleolar RNA-associated protein 12 (Rhodosporidium toruloides IFO0880)
MKSYLRHGPTEAFGLIATGPAVYDGRKAYCPALEDVLVWDVKKGEQVAMWHETGLRALVT
CLLRSPTDWDSFAVGYADGSVRIWNAKTQSVTVTFNGHKTGVTALAWDADGTRLASGARD
TDVILWDVVGEVGLFRLKGHRDQITSLAFVAPRPGSDIDSSAVAADSNADNATTSTSSAA
AAPLAKPSTHLISSSKDTFIKLWNLTTQHCIETVVAHRSEAWSFAYDADSNVLVSGGGEG
EVKCWRVDNEVLLRGARSSSAAAPPKKKLKRAISPIAALSLPNPNHTHNITQITLHPTLP
VLAVHSGERAIDVFRLRTEEELRKKLARRRKREREKKEKGKAGKGKGKGKAVEGEDEAED
EELEVAADGTVEWRDRLAVWSTIRTSGKIKNFSFAPETLKTKGEVQILASLANNSLEVYN
LPPPASSKAPAVEPIKMYTLDLPGHRSDVRCLAVSSDDQLIASASHGSLKLWNVKTTRCV
RTMDCGYAICCSFLPGDRHIVVGTKSGELLLYDLSSSSLLETFAAHTAPLWSVHVRPDQR
GLVTGSADKDVKFWDFEVRQIPSEVEGGAPVRVLTLAHVKTLKMTDDVLAVKYSPDGRLL
AVSLLDSTVKVFYADTLKFFLSLYGHKLPVLSLDISSDSKLIVTCSADKNVKIWGLDFGD
CHRSLFAHDESVMQVAFERGSHLFWSVGKDRMVKYWDGDKFECIQKLAGHSGEVWALAVS
QKANFVVTGSHDKSIRIWEKTDEPLFLEEERERELEEMYANASNPRGDRDELRVLPSGEE
VSQDEATEVSKSTTETLMAGERILEALEISEVDKAALAAYEEAKRRQPTEEMASRVPHPT
RNPVFSMYGNCSAEEYVLKVVKAIPAAQLQDALLVLPFGRVVQLIEHIDVWAHRGWNLPL
TSRVLFFLLRTHYSQIVATRALRPTMVALKSHLRDALKKQKNVLGYNLAALKYLQRQHDS
NKVAEFYEQEVLGGSAGGGGGGGMVDEKAVREMIEKSAKKRKRAALRT