Protein Info for mRNA_6403 in Rhodosporidium toruloides IFO0880

Name: 14771
Annotation: HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 69 to 94 (26 residues), see Phobius details PF01636: APH" amino acids 153 to 358 (206 residues), 64.2 bits, see alignment E=9.3e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>mRNA_6403 HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112 (Rhodosporidium toruloides IFO0880)
MLAWQLHGSDASPAFSALLAFCVRSGLPSLNSPPVPTDHCRPASPTAFGAPYLATLFSET
APSQLHLKLLLPLFLLMPTHTLFLSIATLLNLLLGPLPRLPVFCEVVNCQRSFGLFPVDL
DPGEQNPNVEKTVLICSYFFESRVYRQTYTTGVSRVIKTGTQVSAEEGEITEWVRMHTTV
PVPKVLHVSADDARACVEFEYVEGSEELEKAWPSLDVAAKETIGNELVEVLKVMQEAPHP
ANGLIASYQRERGAALHSFHRPEWPPYTPTLSIPDFFDWARQCAIASGMSPEKWDSDIAP
HIRLDTHIVLTHGDLFPRNILVRDGHLAAIIDWELAGWWPEEVEAAKVLRGLLGRPASMD
GVDNEVAACWFIADCIDRARAGEEEEAVAEQSRRREWVKFLLSPHAAQVV