Protein Info for mRNA_6406 in Rhodosporidium toruloides IFO0880

Name: 14774
Annotation: KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 558 transmembrane" amino acids 121 to 142 (22 residues), see Phobius details amino acids 154 to 174 (21 residues), see Phobius details amino acids 185 to 200 (16 residues), see Phobius details amino acids 206 to 233 (28 residues), see Phobius details amino acids 245 to 268 (24 residues), see Phobius details amino acids 274 to 298 (25 residues), see Phobius details amino acids 350 to 375 (26 residues), see Phobius details amino acids 386 to 407 (22 residues), see Phobius details amino acids 428 to 450 (23 residues), see Phobius details amino acids 457 to 478 (22 residues), see Phobius details amino acids 498 to 516 (19 residues), see Phobius details amino acids 522 to 545 (24 residues), see Phobius details PF07690: MFS_1" amino acids 131 to 506 (376 residues), 126.1 bits, see alignment E=1.7e-40 PF00083: Sugar_tr" amino acids 152 to 290 (139 residues), 35.4 bits, see alignment E=5.9e-13

Best Hits

Swiss-Prot: 41% identical to NAG4_CANAL: Major facilitator superfamily multidrug transporter NAG4 (NAG4) from Candida albicans (strain SC5314 / ATCC MYA-2876)

KEGG orthology group: None (inferred from 45% identity to lbc:LACBIDRAFT_329041)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (558 amino acids)

>mRNA_6406 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MSAPAFDPLERTISHGVLQRPLSTDEEMTFPQLTQAGPHTDAYQETSPTGLVLAREAEAD
VAAAVRTRSQTTLVSRSHAGGKGFVDAEKGTRLDDAKLVTWLPNDPENPRNWSTRKKWLQ
TFLPSILCFEAGLASSIITGGIPEMGEHFGVSELVAGLTVCVFVVGFGLGPLLLSPLSEM
YGRKIVYIISMFLFFIFTLPECVTDSFAVLIVFRFIAGLFASGVMCNAAGSIGDLWAVNE
RGNKMFAFSGILFASPCLGPVIGGALTVSVGWRWMWWVLFIYAGVNWAFCSALLVETYSP
TLLKWRAQKMRKESGDPEIMTEQERQGRPLADVARETLLRPLVLLTTEPIMILFSGYLCL
IYGLLYAFFFAYPIVFVAHGFNATEIGLTFLAVLVGIIVVSATAGPLQERYYQRKVAENN
GAEIDPEYRLPLMMGCSTLLPISLFIFAATSIKHVHWAGALVSGIPFGFALVGIYVSANT
YIACAFSQYSASAMAAKTLARSMVGASMPMWIPPLYASIGHFWSGALFAFIAVAMLPIPF
IFFKYGAQIRARSKMATS