Protein Info for mRNA_6413 in Rhodosporidium toruloides IFO0880

Name: 14781
Annotation: K08490 STX5 syntaxin 5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 transmembrane" amino acids 326 to 344 (19 residues), see Phobius details PF11416: Syntaxin-5_N" amino acids 7 to 19 (13 residues), 18.7 bits, see alignment (E = 8.2e-08) PF05739: SNARE" amino acids 290 to 342 (53 residues), 45.2 bits, see alignment 7.5e-16

Best Hits

KEGG orthology group: K08490, syntaxin 5 (inferred from 61% identity to scm:SCHCODRAFT_13694)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (345 amino acids)

>mRNA_6413 K08490 STX5 syntaxin 5 (Rhodosporidium toruloides IFO0880)
MSRPYFDRTAEFRSAVESAAFRAASSSSGAPLLPNGSNAHGAAGGKGRNAQRSEFARMAA
KIGKDIQATTGKLEKLAQLAKRKTLFDDRPVEISELTYIIKQDIAALNQQIAQLQAFTQS
NLNAGAGGKQVSEHNKNVVTMLQTKLADTTIGFKDVLEIRTQNMKASRDRTEQFTYSGSS
NPRNAPPSDSPLYRPPSSMGGSSILDSQGKGKGKAPAGNSDFLALDLGAPTDSQLGAAEG
GYMQMELAQQQGDDQYLSSRSSAIETIESTVAELGQIFSQLAHMVAIQGEQVTRIDADTE
EIATNISGAQSELLRYYANVSSNRKLMLKIFGAILVFFLLFVLVS