Protein Info for mRNA_6418 in Rhodosporidium toruloides IFO0880

Name: 14786
Annotation: K02127 ATPeF0B, ATP5F1, ATP4 F-type H+-transporting ATPase subunit b

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

Swiss-Prot: 53% identical to ATPF_PICAN: ATP synthase subunit 4, mitochondrial (ATP4) from Pichia angusta

KEGG orthology group: K02127, F-type H+-transporting ATPase subunit b [EC: 3.6.3.14] (inferred from 53% identity to mgl:MGL_2834)

Predicted SEED Role

No annotation

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (238 amino acids)

>mRNA_6418 K02127 ATPeF0B, ATP5F1, ATP4 F-type H+-transporting ATPase subunit b (Rhodosporidium toruloides IFO0880)
MLRSAAARVGRQALQPRVLAPVRFQSTQQPAPAAKASALIDALPGNSLVSKTGIVTLTAA
TTAAAISNELFVLNEEVVILGSFVVFIGYVSTLVREPYREWADGQIQKVKDLLNTSRAAH
TNAVKERIESVGELKDVEGLTKDLFALSKARRGAFCETAELEHETFRLKQQAAVAADIKS
VLDSWVRFEAQVREQEQRDLVETVVSNVQKQLTDKKLQKDILVAAVAEVEQLVKSKAI