Protein Info for mRNA_6428 in Rhodosporidium toruloides IFO0880

Name: 14796
Annotation: KOG2208 Vigilin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1158 transmembrane" amino acids 460 to 480 (21 residues), see Phobius details PF00013: KH_1" amino acids 319 to 387 (69 residues), 24.9 bits, see alignment 7.2e-10 amino acids 614 to 652 (39 residues), 33.8 bits, see alignment (E = 1.2e-12) amino acids 699 to 759 (61 residues), 37.5 bits, see alignment 8.6e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1158 amino acids)

>mRNA_6428 KOG2208 Vigilin (Rhodosporidium toruloides IFO0880)
MDIYTTSFCLPRSSALSTDLVSSPSSSFDLAPQSPTSAKPAQQPQQGQQRAQGHQASQSD
GAVAVATPSAAASSASPTDGSSATRGHSTSSSIGSGQGAAGTDATSVTGGGGATGNGTSG
GDGSQTDGTSAPGTAPTSKRNSVDFNDAMQRLCVDTMAAHQCIVSFTPIEPTSPVVGAPP
HTPSMETNGAAGQAGEKPGKMYNVHLSGGYQQVMAARGHVLRESPFKRKSVVKVPRAEVL
DGKENVKVEMRRKLDEIASLTKAHLAIVGQATASIGFGLETERNVEIVITGPYESVEQAR
VRLLVLLDELSGLHSEVCEIDYKLHPILSGRKRCVIQTIQEETATNIYFPTPLSGVLDQK
NLSLLAKQNLIFITGEFFGVQRARDMLFQVSLHKSKCIISRDTAILPRKLDWMLSDRLED
IKQIMNDNGTFISFPPIGSQASLISVYGDHRVNIERTIRSIMALACQFYVASFWLLPASF
DVFMPPPTINPAQIPPILRHISVTSGAEAVFKSNCFEFHGLESEVRAAVQLVLELDFVKA
FHHEIRFQIELANEHREFISGKKNGKLNKIMKSANVKIKFETFNDYNFLIDVAGNDPGVL
HGLTMLQEELPAEISFHVPEAYHKRIIGVGGKNIQRIMKKYGVYVKFSNAEEFAALGGYN
DNEDNVVARTPAKNAMNLEHLKQSVMELVAPKDKDFIVETVSIPRRYHRTLLGEKAIFIH
DIEAKTNSHVRFPNKETASDVVSIFGPESQVHIAAQMLLDHVPFEAEYRLPHSTEMANLA
LSQDFVNLTEKIKRDLNITILPWVDRSGGNEETIIRFCLNRSNVDFLATCRDLVEEYLVQ
RNINLYPGSLRPRSDSFADVFAPFNSKLLSMSTMTGEGDARPDPRPGSDRKLRLAASSPN
IKAIFDANPGGSTGNHPQHPSRYASAGGPIAEVPPQVEAMGAGPFAPFYPAPPVPRIPPQ
YAQHQPPPHHHQVSPAHHPHFGLGPFASAVPQPHQMPPHQADYHWGVPRPMQGFPSPVPA
AAPGYPGGPVSPAPGAGFAPIGPSHAQSPAARYEDGFRSPLQRSHHGPSASFSVAPSAGA
GQMASGNSTLAQSSSVEDKLKDLSATSPSGGRQPRSLAGRAQSLDLSQHAAAFTRASTAP
RHEAVDEVASVLGGLGLN