Protein Info for mRNA_6432 in Rhodosporidium toruloides IFO0880

Name: 14800
Annotation: K18203 LCMT1 [phosphatase 2A protein]-leucine-carboxy methyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 transmembrane" amino acids 206 to 225 (20 residues), see Phobius details amino acids 232 to 253 (22 residues), see Phobius details PF04072: LCM" amino acids 17 to 236 (220 residues), 60 bits, see alignment E=1.6e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (357 amino acids)

>mRNA_6432 K18203 LCMT1 [phosphatase 2A protein]-leucine-carboxy methyltransferase (Rhodosporidium toruloides IFO0880)
MLPPSRLSNTPTNPDAAVRGTDSDALLSRHSAASLGYLDDPFSALFLSPAQRRTPERRPP
LINIGTHARTWAVDELVEQFLLQREVGDSQTGQAWSCQVLSLGAGTDTRFWRLRRKWEAE
GREWACRKWVEVDFPEATGSKARAVSGKAELKSRLGGDVKIEQGGLGLSSPLYALLPGDL
RNFDALSVSLLSPPAFPSTSASTDPILLPSLPTLLLLECVLVYLPPPDTDAILLWFASTF
APGSAVVSYDPFGLDDSFGKVMRRNLALRSLTLPGADSTPSLASLTSRLEKNGINGSTGS
MSVREIRDEVVPVKEKERVSKLENLDEVEELNLVLEHYAVTWGNVGGRAGGIGLKKR