Protein Info for mRNA_6468 in Rhodosporidium toruloides IFO0880

Name: 14836
Annotation: K05012 CLCN3_4_5 chloride channel 3/4/5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 902 transmembrane" amino acids 172 to 195 (24 residues), see Phobius details amino acids 238 to 259 (22 residues), see Phobius details amino acids 272 to 291 (20 residues), see Phobius details amino acids 311 to 328 (18 residues), see Phobius details amino acids 340 to 364 (25 residues), see Phobius details amino acids 376 to 393 (18 residues), see Phobius details amino acids 414 to 435 (22 residues), see Phobius details amino acids 453 to 473 (21 residues), see Phobius details amino acids 508 to 527 (20 residues), see Phobius details amino acids 533 to 555 (23 residues), see Phobius details amino acids 581 to 627 (47 residues), see Phobius details PF00654: Voltage_CLC" amino acids 248 to 629 (382 residues), 296.1 bits, see alignment E=4.3e-92 PF00571: CBS" amino acids 660 to 713 (54 residues), 19.6 bits, see alignment 1.1e-07 amino acids 779 to 824 (46 residues), 22.4 bits, see alignment 1.4e-08

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (902 amino acids)

>mRNA_6468 K05012 CLCN3_4_5 chloride channel 3/4/5 (Rhodosporidium toruloides IFO0880)
MDFRSSTDPTPPPDLSTFSLGPCPALQPTPFPSTSSTSQLSSHDARPGPSRLSSTNTSST
PKGRTRRLSSIATVQGTPVIPIERDFGWDTPAIGSGAGGRGADGRRRLGGEGVRKAVGEE
SRRYEDFTTIDWVADTLLERSRRRYEAATATRTLGHSLKAGFWRVVEAGQSWGVVSLVGA
IIGLNAALMSIMTAWLSDLKLGYCTQGWWLNRKFCCWEIEEGFCEDWVTWTGWSGVQWVV
YVLFAGLFAFSCAFLVRSFAPYAAGSGISEIKCILAGFIINGYLSFATLSIKSLTLPIAI
ASGLSVGKEGPSVHVASAIGNVVASRFSRFKRSQAKMREIVTAASATGVAVAFGSPIGGV
LFSLEEMTINWPIKTMWRSFFCALVANVVLSAMNPFRTGKIVLFQVRFDRDWHFFELGFF
ILIGVFGGLYGAFVIKYNLQVAAFRRKHLANNAISEAVTLAVLTAAVGFTNRFLRIDMNE
MLDVLFRECENGGDYENLCQTWAQWRMVNSLLLATVIRTCLVIVSYGCKVPAGIFVPSMA
VGATFGRMVGILVKAMYRAHPTWSMFAACDPEKPCITPGTYAFLGAAAGLAGITRITVTV
VVIMFELTGALTYILPTMIVVMVTKAVSDQFGGGGIADQMIRFNGYPLLENHDHAFGVPV
TTVMRKELVCLPSQGMKLDELQRLLDKTKYQGFPVVKSRKDKTLLGDISRRDLEIAIEKA
QLSHIVAPDAPCLFCPQDDTVSQVGSPSLVNDDGWGTPPDEWDGGEEGVVDFTSFVNQTP
LTVSPKQPLEFVMQLFRRMGPRVILVERFGELIGLVSVKDCLRYTIAHEAGHDHDAAHSS
NADELEATLEELRLWWRDVRRWIAEKVTGRTIPPSPEIQLDGAAVFASSSEDAGLSDIDA
RR