Protein Info for mRNA_6473 in Rhodosporidium toruloides IFO0880

Name: 14841
Annotation: HMMPfam-XPG domain containing-PF12813,SUPERFAMILY--SSF88723

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 643 transmembrane" amino acids 483 to 501 (19 residues), see Phobius details amino acids 550 to 568 (19 residues), see Phobius details PF12813: XPG_I_2" amino acids 139 to 252 (114 residues), 42.3 bits, see alignment E=3.4e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (643 amino acids)

>mRNA_6473 HMMPfam-XPG domain containing-PF12813,SUPERFAMILY--SSF88723 (Rhodosporidium toruloides IFO0880)
MGVQSLTTYVRKQNLGVYETHPNPQDTSPIPLIVDGLAFAYHVGLVDTFEGGGYLRIRAN
VRRYVEYWRVCGLEPEFVWDGPFDASKLPTVIHRSTQSLQRSLKWMSLPDYLRADYSNAQ
KATRLPPLTHMAISAELEALGVPSHCAEEEADSPTAELANRKNGFVLSNDSDYFIYPTQC
RGYVPLNSVEYGPFNDPRLEKVPPNTPPRIRFRVFQPALIARSFSIPPAFLPILAALIGN
DMHNYAASLSQNRRHANYTGYVDPRELLRIAGILLMCAGMPVETPAQIQDVVLAVLPRLL
QRPVLDPNIIANIAASAYSYALRPLEAPSPTYPLHPRPTDTPNQAKARAIYNTAYKSSRL
SSFVLHVLKHGVVMLQGMVEMPEHQSPMVSLARPIRSWIYAIVHEIVGIERPSVVEYARS
GFELYPTEVAVPNLHDLATASEWDALPDVLTLRPLVEQDKLIRKTIAYAALRHPKRYISG
FDGYGMVDRYTFLIVSINWILRMHRRPFTKHEVNCTVLVAALIRHEPSRLATLAPLAPRP
PVKAFIQRSVELISTLVTVNILFQVLLLHPDGVDDSPCAPHELFDGKAFHALLAMSEREF
DETLKASDETAQLAFAKVVAACWGGIAELEARTFLTHQPLAVR