Protein Info for mRNA_6478 in Rhodosporidium toruloides IFO0880

Name: 14846
Annotation: K15442 TAD3, ADAT3 tRNA-specific adenosine deaminase 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 702 transmembrane" amino acids 620 to 642 (23 residues), see Phobius details PF00856: SET" amino acids 153 to 263 (111 residues), 50.6 bits, see alignment E=3.2e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (702 amino acids)

>mRNA_6478 K15442 TAD3, ADAT3 tRNA-specific adenosine deaminase 3 (Rhodosporidium toruloides IFO0880)
MRIETDKKTDCGRGSSHTIDALPLHHGANGDERTTGHPTLLAEPPHPPSSNAHADLPSVA
ALSLKDDGVDSPVEQKLPDTLAPTATIPAGAEQRSNLDETAGKARGATRADLAYSYPPPP
SGDSSSGSLAYPPATPHLTRAPIEIATRDPSVGRGVFATDDIPAGQVIEISPVLVLSQEE
YKGRKEDEEDDGVLKGVEASQLRGYVFTWGRDGSMAVALGIGSLFNHSASPNVTYSLDFS
QYTISYRTAKPVPRGDELLIFYGHSVRFSNSDGTAPQDAQVEDVEAAEDSWGGLGNLDSF
DGKLEQADDDRARLAHLKTLTPEQLAERDEEVVGPHEAEFPWRKVSEIIDPEDAELSLMT
CYAIDLPARCAGAVFQFVRKHSTRNKNELSHLKRVRPIESSRSSSLVEHDRRSDNAEESD
GRSSQLSEKRRTTRTDPDSYQSILLFPVTSAPPNLVDLLAASPVAGILGSTPVPPLYTVE
VPAEAAHTEQQAEEWSKVWPVTIVHIREGAKATRKKKGWERAKLEWVEQQARKVWELAEE
AGRQGEHPIACRITDSWSSPFHNSLRPPVSLVTAHDTRLSTGNVLTHAASNAIDAVAYLD
LQGGRPPPSAFCPDSAQPPYLLTGLTVFLSHEPCLLCSMSLLHSRIKNLFFIKRALGAGG
CGSLYSVHEDGGLNHRFEVWEWKGGRDGGIGVGAGENLRLDP