Protein Info for mRNA_6492 in Rhodosporidium toruloides IFO0880

Name: 14860
Annotation: KOG3269 Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 34 to 53 (20 residues), see Phobius details amino acids 59 to 77 (19 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details PF05620: TMEM208_SND2" amino acids 15 to 187 (173 residues), 155.4 bits, see alignment E=6.2e-50

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (202 amino acids)

>mRNA_6492 KOG3269 Predicted membrane protein (Rhodosporidium toruloides IFO0880)
MPSPLRLELIALGTMAGASNKRIAAANARTLKTLQLGFAVSGGIYLLHLLLFSSGRSYRR
IFLFAATEAVAIGLWNQMKAMARRGEELDGSKGLVSYAFDIVYVTWAVHVLAALVTAKAW
YIYWVIPLYALYRLGSFALPYISPSLAARLNGSSASIAGAGPAGGEAAVGQPQQESKRQQ
KLRKRMERGDPRVQQRELKQAR