Protein Info for mRNA_6494 in Rhodosporidium toruloides IFO0880

Name: 14862
Annotation: KOG2885 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1268 PF15459: RRP14" amino acids 774 to 848 (75 residues), 41.9 bits, see alignment 1.3e-14 PF04935: SURF6" amino acids 990 to 1233 (244 residues), 144.6 bits, see alignment E=3.5e-46

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1268 amino acids)

>mRNA_6494 KOG2885 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MTSDDEATSFFGRLARPVANGSATRPRKRRKSSHGGAADDSSSAADSSSDVEIVGSSAAK
KRSAAKGKGKGKAMAPQPLSRAKQVDKPSRRAKEVSLLSSDSESSVSDELPTATQLDAHG
AALLAMARSKGYAGTTPPRRAKRQEERVEASNPAKQRTQHEAVSSSSEDSTESRRRRRKS
NSTELTTVSDRSSSATKTKASTSRAQTRKAAPTKPATKTSNTSRRKKAASPSRSPSPQLE
QPPEPQSFWQVDAQPAPGRGAKRQKHGEASTKLKALSERGKMLVLPDDEHEDEIVGSSSS
ASDGPRRYETVAAKAKREKEEAIAALKAKRGRQSLPLQDAPNGAAPRASPRKDKGKGKAA
VEPTGQCPVCSEEVPLDDLEVHASACLAIFEDVSDTQQQAPPPGQAAQPAAPRAGTSTAF
RPAGAGTSAGSTSRAQANRPPPAAKAGPPARSSGDNGLANELFPSSPPVQRSTRAAASAM
GKTRAATLVEDSDKDVGRGGARAGRNQGRRQYDAAFDGEDDGYIDSDAYVDADTSLHKTV
VELSDDDDDIVIADVSRNAAAGSSRARGGTRGGDGREGAVNTARAKGPPENGSSPPRGSI
YVSTLGRAYREGYENLFTTATKSKSGSRALPGLGNNDVDDTDARAFDALAPPAKSTGRGR
GGGGRKASGGSGRKASWVLLLRPFTFDRSRVEEDSLANQCPDGLGGWDYLRELLRRHLLR
LIAIRAISRNVNSPARDELNFTQPLLVRYFPCCSTMAKSAPGASRMKPDQLKASIEAHNA
SFDELLRHVPAKYYIRPESDDEDETPKQSGKLTKAQRKALKKAKQDETVRAAKNEAKREA
RLARYDPDEPKTIAEIQAAKLSGVAKGKKRAADSDDETDASSDDELNGDAWEDEEDSPNE
TDFADSDDEDGEMLELNDEGLLPQDAAKKSGGPAPTITELREKLQRRIADIQAKKRGEKA
AASGTKRDDASDDEEDDEEEGSEAEVKSKDDLLAERRRRAALRDNRRKKLKERIKAEKSD
GAKKRANEPSNGRKGGGKANAVQDDERPRKKAKADDATGAESHSLVPYDSATASASTSKA
NPNSIAFSTLDFSSSSQHAADAGLTPKQLKKMQAAEGSLKKNRHALPKDANQALEILQKR
KERLDALDPEKREKKEEKERWEKVMLKAEGEKVRDDEKRLKKMAKRQEREKRKSAKAWTD
RKATVEKSISDKVAKRNANLAARSKAVKDKKMGIKNKKSGSGKKVSTSSGKARSKGRPGF
EGGGRKKK