Protein Info for mRNA_6515 in Rhodosporidium toruloides IFO0880

Name: 14883
Annotation: K16578 CLASP1_2 CLIP-associating protein 1/2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1106 PF12348: CLASP_N" amino acids 353 to 579 (227 residues), 193.8 bits, see alignment E=3.4e-61

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1106 amino acids)

>mRNA_6515 K16578 CLASP1_2 CLIP-associating protein 1/2 (Rhodosporidium toruloides IFO0880)
MDWTRFETDLVHQDNDKRIQALHRLAEELSHAEKVAEPEQLAQLVRQSLKSNNSHVSNAA
LACLPPLFPLLVPADFDATRATASTISSLAHNLKTVFSLLLPLDKLGDAKTATRELARES
VISAGKASLSLGVAAGTGASKDKEGPWQLVERGMQEYGFQSKNARAREQALHFFAAIRCP
APDSHFPLPPLRPFTPLLLPLLSDSDSTVRSLALHTCIAVFTHPSVSPAAKADLKKVMAK
MELSKRVQEQILTAVLGGSTPAMERSPSQGSLTSSGARSESSAAATSDAAPPARMTRSRA
AAVAQSSSSTRQPPSLLSSLPSAAFPADTSAVHTPSSAELAPVYVASERDLLAEFEAMKS
GFEGKETEQNWTVRDRSIARIRGMLLGGVAKGELEGVFAQCVREAQDGIIKVSSSLRTTL
AISALTLMSELASALPADLFEPLFDGFLSHCLSVAGQTKKIVAAASQNTVTSLLQHSTYH
HRTLQLILLTLAERTASARQFAAQHILTVIRCYAKTSKSAIEHSGGLADLETALQKGLAD
ANPQVRETSRTAFWEFERVWPDRAALVAASLDAAARKLLDKVRPTGDAPKQDSPVKARPP
TSTATGQAGAAKKPSVREMMMVARRQKAAAEKEEQAEAEQVETPDRPRRVLSTLTPDASP
SRPTLSPARSSPGPSTLRTPTRPPVSPSFRSANTLTNGTPSRSSMRAAHSSAVSEPVDEA
MRDQAMQAEQAAERLLEIAQDEEEAFLPSARADAVARTPQLNRTLPSAAMQTPANPAVRR
LARPQAVLQDSPDPRDGSGAGPGRGSWWVQRTEALAPPPPFAPDSPEKKAEIDGLISSLR
DMSIDATSLRKLSSLAKERPVRENEDEGVGRADPPTPSKTNGRDGGEGDKITTNEFWQSD
RRFDKVYEGVKALLLQPDAPETGMTRDAALLLLKDLVENQSPCFTGSEADLFDLLFKLRE
DPSRSSVAATEAIAHSFTSRLEPLYGLGALTPSLSAYLFSASKTSAPDALARSFALGLRL
MGGFFEQLPGVVLEDVLPQSADLLKRALNDTKSADLRRAAIMALVSAQVALDPSASGQDG
KLAELVGGLEPDQQNLLAYYVAKRRP