Protein Info for mRNA_6522 in Rhodosporidium toruloides IFO0880

Name: 14890
Annotation: K19871 SALL sal-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 561 PF00096: zf-C2H2" amino acids 393 to 413 (21 residues), 21.7 bits, see alignment (E = 6.6e-08) amino acids 419 to 441 (23 residues), 27.1 bits, see alignment (E = 1.3e-09) PF13894: zf-C2H2_4" amino acids 419 to 441 (23 residues), 20.8 bits, see alignment (E = 1.5e-07)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (561 amino acids)

>mRNA_6522 K19871 SALL sal-like protein (Rhodosporidium toruloides IFO0880)
MLMDVEEPAIPPSARTHTGEAQPATSRRLPSISALLNAADSPPLGATPESTQTFLAQNGF
SRGEHSSALPPSPPCKANYHEQYPTVHSSSAAAATEAGLAYSAQHPPDAPSPPPARQLTS
LEFPDGNALRPLPSGLSSFNGRGRSASIPHVYGFDESRQSRFSGFATSSERHDDSAGSAV
AERDTGSAGGGPAGDFGLRWSPTDPRLDPSRPRALSISTADEYRTRSWLPGAPHAASRER
EGRYATADFAASPPPRAPPYYPPQAGPSTYPAEPSLPPRYPYDAYRRSSLVNAPFTNPYP
PYSSSPAPPPHIPLSIPSGLPGAGPVSPPSAGPSTSTFPPTAYSPVGPPPQSSWTPPAPA
PPPPPAPFNDESASISDAQNAIESTSDAGRYGCPHCPKRFARPSSLRIHMHSHTGEKPFT
CPLCDRAFSVQSNLRRHLKIHKGGEAKVGPSRRGGSSTSSATATPAAGSSRSTVPLVLAE
EDEAMGTQPPSRPASAEGYSGGTDGDGDGDEGDAEGSVVSASTSSAPGEPAIPAPTHPQQ
DEEPPRPLVRTEWPRSREQAD