Protein Info for mRNA_6530 in Rhodosporidium toruloides IFO0880

Name: 14898
Annotation: K03809 wrbA NAD(P)H dehydrogenase (quinone)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 203 TIGR01755: NAD(P)H:quinone oxidoreductase, type IV" amino acids 8 to 193 (186 residues), 172.1 bits, see alignment E=7e-55 PF03358: FMN_red" amino acids 8 to 147 (140 residues), 38.2 bits, see alignment E=6.4e-14

Best Hits

Swiss-Prot: 47% identical to FQR1_ARATH: NAD(P)H dehydrogenase (quinone) FQR1 (FQR1) from Arabidopsis thaliana

KEGG orthology group: None (inferred from 45% identity to scm:SCHCODRAFT_256303)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (203 amino acids)

>mRNA_6530 K03809 wrbA NAD(P)H dehydrogenase (quinone) (Rhodosporidium toruloides IFO0880)
ALAVLPTDGHVRTLAEAIAAEAKTTGVEVDLLQFPEILTPPAHPSRPMQMHAAPRGDYPD
VKPDDLTRYDGFLMGFPTRYGRAPAAVSAFFDATGGLWAKGALIGKFASVFTSTASQHGG
QETTALTTVPFFAHHGITFVSPGYAAADLTDINEIVGGSAYGAAGIASGDGSRGISEKEL
NIARNQATYFANTVKTFVAGKTV