Protein Info for mRNA_6543 in Rhodosporidium toruloides IFO0880

Name: 14911
Annotation: K08712 ABCG2.SNQ2 ATP-binding cassette, subfamily G (WHITE), member 2, SNQ2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1590 transmembrane" amino acids 579 to 602 (24 residues), see Phobius details amino acids 614 to 636 (23 residues), see Phobius details amino acids 665 to 686 (22 residues), see Phobius details amino acids 692 to 713 (22 residues), see Phobius details amino acids 723 to 742 (20 residues), see Phobius details amino acids 832 to 850 (19 residues), see Phobius details amino acids 1255 to 1277 (23 residues), see Phobius details amino acids 1285 to 1303 (19 residues), see Phobius details amino acids 1329 to 1358 (30 residues), see Phobius details amino acids 1370 to 1390 (21 residues), see Phobius details amino acids 1398 to 1417 (20 residues), see Phobius details amino acids 1437 to 1455 (19 residues), see Phobius details amino acids 1521 to 1542 (22 residues), see Phobius details PF14510: ABC_trans_N" amino acids 140 to 209 (70 residues), 54.9 bits, see alignment (E = 2.3e-18) PF00005: ABC_tran" amino acids 235 to 392 (158 residues), 63.2 bits, see alignment E=7.6e-21 amino acids 937 to 1088 (152 residues), 61.6 bits, see alignment E=2.4e-20 PF01061: ABC2_membrane" amino acids 578 to 772 (195 residues), 128 bits, see alignment E=7e-41 amino acids 1238 to 1447 (210 residues), 127.1 bits, see alignment E=1.3e-40 PF06422: PDR_CDR" amino acids 783 to 874 (92 residues), 98.8 bits, see alignment 2.7e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1590 amino acids)

>mRNA_6543 K08712 ABCG2.SNQ2 ATP-binding cassette, subfamily G (WHITE), member 2, SNQ2 (Rhodosporidium toruloides IFO0880)
MAVPASQPELATPDRQNPPRQARTSGGGSVIGRRGQVSDAHLLRTSLFPPGLSCCPATRF
ALVFDTAITANNPARRQHPRIPMTEAAKPKSTSSSSSGTLPGSEPAPVVGDKSSFAQTHP
NLQRTISRDVPVNYFSPDGDLQRTLSRQQSGWSTHTQDPNAEDFDYEKHVRHLLRRAEES
GIKQRALGVTFKDLTVTGEGSGISYGASLTGLVRAIPALPKTIAAMRHPKVKAILDGFTG
TLRPGEMTLVLGRPGSGCTSFLKTVANYTESFRGVEGTISYDGATPQEMRKHHAGDLAYL
PEDDHHLPHLTVGETLSFAAAARTPAAPARLGSRNETIERKRDVLLTLFGLKHTYNTKVG
NDVVRGVSGGERKRVSIAELLTTGCKLGCHDNSSRGLDASSALEYVSALKVATKIGRLTS
VLSLYQAGEQLYTLFDRVAVLYEGQLIYFGPAHMAVDYFKEMGYEPQPRQTSADFLVAVT
DVKGRFPREGYESKVPKTPLEFVDYWKKSNLYKQLVEEVDARLAITESDEGRQHLESYRQ
SAAAERVKRQSKKSPYLISYTMMLRLAMKRRYRMQMNDLPTLAIVSIAALFQALIIGSVY
FQMPKDTSGFFSRGGVIFFAILYNTFTGMAEITSSYSQRPIVVRQRNFAMLRPSADAFAQ
TLVDIPFKLVTVVVFDIVLYFMAGLGYTADQFFIFLLFTFLTTMAMLIFFRMLASINRAE
PNATLMAGLAVLVIAIYVGYAIPRPSMRVWFRWLSYAQPVSFGFEALLTNEFRKLNVPCA
TLVPAGPSYPGIAVANQVCAGTQGSTPGSAIVIGSQYMEQNFGYKWSHTWRNFGFIWAYL
LFFLAVNLISYEYQRDESAGGGILLFRRGKAPKELVAAIEDPARKGDEEQANPSVDATVD
EAEKEKAAGTLERATDVFTWRKVCYDVNVKGGQRRLLRDVAGYVAPGKMTALMGESGAGK
TTLLNVLAQRVNTGVVTGDMLVNGRPLPVSFQRQTGYAMQQDVHDPTTTVREALRFSALL
RQPRTVSKAEKFAYVEEIIKLLEMEPYAEALVGEVGMGLNVEQRKRLTIGVELAAKPALL
IFLDEPTSGLDANASWSIILLLRKLAEHGQAILATIHQPSSELFQAFDRLLLLKKGGQTV
YFGDIGKNSETLLEYFHARADKRCKPEDNPAEYILDVIGAGAAAKVSQDWGQLWLDSDLA
KKVDREIDELHRSKEGEASQADESPDAGRDFAAPVGVQFATVLRRNFANYNRDSVYVMSK
VGLNVIAGLFIGFSFWASPYDQSGLQNFLFGIFMAVVLSAPLSQQLQPKFLALTQLYEAR
ERASKMYSWPVFVITAILVEIPFNIAAGTIFFLCWYWTVGFPSSSNRAGYAYFLFIIFET
YFPTFAIAVASFSPTPMAASVLFSSLFSFVIIFNGVVQPPSQLPYFWRSWMYHLTPFTYL
VEGLLTNAIGGAALHCTQQQFQRIVPPSGQQCVEWLQPYTSMAGGYAQVLQDGSCGICAY
SSGDQYLQQLNMSYSHRWRDVGLLFPYIGFNIFATFVGFYLFRIFDWSSLSFRGKKSSAT
AGQPSHESTPQNEQEKGVKIGDGRTDNELS