Protein Info for mRNA_6548 in Rhodosporidium toruloides IFO0880

Name: 14916
Annotation: K11592 DICER1, DCR1 endoribonuclease Dicer

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1910 PF00270: DEAD" amino acids 492 to 669 (178 residues), 36.1 bits, see alignment E=1.7e-12 PF04851: ResIII" amino acids 501 to 670 (170 residues), 26.4 bits, see alignment E=1.9e-09 PF00271: Helicase_C" amino acids 906 to 1014 (109 residues), 45.7 bits, see alignment 2.4e-15 PF03368: Dicer_dimer" amino acids 1088 to 1178 (91 residues), 76.1 bits, see alignment 6.1e-25 PF00636: Ribonuclease_3" amino acids 1538 to 1642 (105 residues), 68.3 bits, see alignment 2.5e-22 amino acids 1729 to 1851 (123 residues), 59.5 bits, see alignment 1.3e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1910 amino acids)

>mRNA_6548 K11592 DICER1, DCR1 endoribonuclease Dicer (Rhodosporidium toruloides IFO0880)
MPVAPTPQAPAARPSPAQAGRLVTSPSSFLTKKKKRKGKKGRQINKDADLEVGAVEGGGT
GRVIVPPSAGSGPGAASASAAAGTYKQPRVKVRVKGASSGRMALPSQSASFRNKNGGPSW
SSSKSAPLPHATPDHYRPVQTSDGSLAFTRPRGSELNRSIAAVLQKRPAEILDEYEKDSR
TKRQKTAAEELKRLMMAEEEEEEEKGNESHEESLAGGLTAGAKDDEGWVEEDEDLVVKPS
LPPSTPTQQPANKPATLDLFAAPPTAPLFPPIKPFVFPAPTTPTPAHPLAVPTFQPVVAK
QGSPSPQQREAEVQREAEVEKVAEKKEQETTESLPSVGFTTPSASVSAAPAEDVHDVAEP
AAASAPIAPLPRALPLSSSTPLPTPALRSAALLLATKRRKPLTKARKARLRRAPQLFDYL
SDQESEDWEDVDEVGEKEWMRRRPRNGRAVEGRMEPVEKEEESEKEDEKDVKVDRDILPS
ARAHVDKLVPTSYQTALLERAKKGNLITVLGTGSGKTLVAADERYDATQVLLIEWQHKTI
EEKRMKAGQPKRMCFFLTNSVPLVHQQANTLACNTSLRVGKLFGALGVNLCSPSEWAYNF
ENFDCLVVTAQLILDSLAHGFLRMEQIALLVFDEAHHAKSNHPFASILRDFYHRAPVNQR
PRILGLTASPLDSNEGVEEAKKLEALFNAKLVSAPPETQAELRAMVARPTILRVDYDPAP
SYFRTDLFDKIMSKVVIQDDTFKKYYQGAESVLRDLGPDAADLVWHLALQRYKAKFLPHL
PPSDVEDDADESAMEVERELLGSKMAATSLAGGGAWDGGAVIESGREARKVTKAEQKRLK
RKKEKQRIRNELREKALEEVNLELPDWLKIIEEHKPSLDYERLSPKLQKLLDLLKACKPG
ADDFCGIVFVNRRLDALVIAQIIKEFAKLEPDLAWLKVDCVTGHGTGTGNALGPRMAWHE
QAAVLTGFGEGETNLLVATSVVEEGLDVQPCDFVARFDLYTSHIAYIQSRGRARAPGSHY
LLFLEKGNLEEKKKLLQIAHFDRDLFTFFDRIQDEIEDDDEDFYGPADERCTYLVEPSTG
AVLTPHFSLSLLQRYSNSLPKSDEFTVTRPQYTINDYGVNEFGARQFSCTIVLPSASKVC
VVTGPLCETQAAAKRSAAFATCKVLRNVGCLDEHFLPPRTFSAEEVVDADTGEVVGSKKR
QCEYEKKVPDALIPRSPCGDVTTFYATFLHYGSSNGETTISGQRYRPVLFLSRNPLPPID
PLTMYLAGEPVKIFVTPVGAIPLTTEQRRLVTDWDVQLWQSVLNKPLRVARGTVEGEEGR
TPLDLIWLIAAVKDGLEIGASGIKVDDLDWDGMRRVKEEKLDHKNLTGLEDSVVIDMAKN
GCRYFFERIRQDLHPYDTLPQGRQSDAGFSTLIDYYTSFNEPFFHSVRVDPDQPLLEISR
MPKTVTHLNKTPRNDVTPTAKKLLHHATRFAISQACYKHPLAASIFRTALMLPSVITDLE
QSVLTAELNEKIFGNALAFPLVKAALTTPSASTGIDGDRLELLGDALLKHIISAFVFVSQ
DRTTHEGVMHRLRLALVNNAYLCAAGKKLAIPAYLVSRPFTSRHFLPPNLCLVDSKNTPP
PSTAVIGDKTIADAVEALVGAAVETGFEQGDLHKAYDLALASIKTVGIEIGSVTVWNNFA
RLYGPIGEEKEVEGDRIAIEKAVGWRFRHAFLATEAFTHPSRLDMVSFERTEWLGDAILD
VCVVRWTWKRWGEELGPGTLTELKGGCVSNDTLAALAVELDLDKFLIYNHPTLEINIKLY
RERLLEAREKEFKEAAEEQRSLRPYWLTLDPPKAVADIIESLFGAVYIDSGFDPAAPQQI
FDYCLAPFFQKWISPTSLKLDCIRILLERAQAAQCDDGEVFIPSFAYLPC