Protein Info for mRNA_6554 in Rhodosporidium toruloides IFO0880

Name: 14922
Annotation: K15258 PARP6_8 poly [ADP-ribose] polymerase 6/8

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1083 PF00644: PARP" amino acids 725 to 777 (53 residues), 34.9 bits, see alignment 6e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1083 amino acids)

>mRNA_6554 K15258 PARP6_8 poly [ADP-ribose] polymerase 6/8 (Rhodosporidium toruloides IFO0880)
MPRAPPKKRQRVDDSPQPVSGAMQTRSRASTQRAAPPPQPASKSRQVVDITDTDDDMLGG
DDDEEAFEYESDIGSAAGGDAGAEDGDEEDGEGAGDVDDKRDAEVMVLSSDDDSSAQEPP
PELPKAKGKLTARKQFAQDIDNLSKRFAGTQDELVTGFKRDDGDDMVRFSLKHPKFPRGL
KLSLMFPELGGYPKTHEVMCFTENEDVPPEVETALGEVAHLPKQADRSLNGVVEFLIHRI
VRLQPNPWATSATQQDTDEENFDYEDELMDAGINIAKDSELMKALRSDFKQLLDAGFRPG
FTRVSELELVVSVSKRINLLGVPARALQAWDSRLITGKIVYLVCLMSFGRYPVDLDNQTS
GQVKFKVGISPKYKPSKTAIASAFRAHTSNPYTSGEFEAISLSNPLDALMNDKFQEILFT
RRCNDRVGWAGAEQHCFQHGKTDVGVEKKKARAADKEEKDLSEAHAKLLPKDPMSSSSTA
SNFPLLAFSYLVRRFIMCPRFCLNCYKRCDEKITSLKPFVCDNPLCLFQLIQLGLGPSLE
HEITSNTAAVDLLVQLAYIGAKEGGLKGELLPNGLGLQVPETVKPPEQIKPDDPTVDFDS
LTDENQKRAGITALIAQLPPIDEMRRWLLGLDMTDDERMLNKIRKLTDMRDGTVPLSAWR
LLRFIVASNTAYLKQIDDPDELVQGVPRDYLQFKLIVGSPLKEHLFTESVKAAQAKDNNA
VRYPSLFAWHGSATKNWHSILRTGLHYREVINGRAYGAGCYFARQGEVSLGHYAQPTSTM
WKNADFPISKMAAICEITNLPTEFVSNNPYFVVSDINWITCRYLLVQRMASFADGSEVQS
TSKASSSDLVKAGSVKTLALDPKYPITLNNTKVEFPDVGDKLEKLEKSLSNEPEDLHDSD
TEILKEPPAPAPSNKLKRTQSGTAAAPAPREVDKFVPADAKRLEMLRMLPPPKNPNKAAV
SMIQREMKSMLKVQAQEGPTRAGFYFDPERSNDNLFNWIVELPLESFDQDIPLAKDMRQR
GVKSILMEIRFGDTYPFSPPFFRVVHPRFMPFIRGGGGHVTGGGSICMVRCRRRRNSLDQ
ADL