Protein Info for mRNA_6556 in Rhodosporidium toruloides IFO0880

Name: 14924
Annotation: K14793 RRP9 ribosomal RNA-processing protein 9

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 613 PF00400: WD40" amino acids 182 to 210 (29 residues), 15.7 bits, see alignment (E = 1.1e-06) amino acids 270 to 301 (32 residues), 17.5 bits, see alignment (E = 3e-07) amino acids 498 to 524 (27 residues), 22.5 bits, see alignment (E = 8.1e-09)

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (613 amino acids)

>mRNA_6556 K14793 RRP9 ribosomal RNA-processing protein 9 (Rhodosporidium toruloides IFO0880)
MSDAFFSKPRPFSKRKRDDAAAASRQASRHGTSVRGAALSRGGKERANGRKGAAGAGANG
ARNKGKRRAEEDDEELDADGGDFDSDDVGSDEAEGAEEGTDEEDDLETPAQKRLRLSQMY
LKSLEKDKEEEYGFDAADLDRDIIAERLQQDVLEHTGKMHLSVASTLQLPIPSTSIFRTP
AKGHRGSVTAAVASHDGRWLYTSSKDGAILKYDLSAITSPSSDSSSPDSRRITRAAYFAK
ALSESQKRNGEKHKRFDGKDKGKGKETVSEGHTDEILDLAISHDGKTLASAGRDKVIGCW
NVEGEGGKWLRGLGGHKDAVGSIAFRLGTNELYSSSFDRTIKLFDLSTLSYIETLFGHQD
SIQSIDALRGELAVTAGGRDKTVRYWKVTEESQLVFRGGGASRLRNVSDGALEDEGIEEE
EPKRRRRQAEAKGRVKFVEGSIDCVAMVDDSTLLSGGDSGTLCLWLITKKKPIFKVDLAH
GINEHASETEGIIGTPRWITALSCLPYGDVFASGSWDGQIRLWKIDERLRSFSPLTTIEA
PGFVNSLQLIAPSLRPTKESHLAPVSTVKDKKAEPEPKSLIVVAATSKEPRLGRWMRFKE
AKDGAVVAVIPMQ