Protein Info for mRNA_6558 in Rhodosporidium toruloides IFO0880

Name: 14926
Annotation: HMMPfam-Bacterial signalling protein N terminal repeat-PF03707

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 990 transmembrane" amino acids 15 to 36 (22 residues), see Phobius details amino acids 45 to 69 (25 residues), see Phobius details amino acids 90 to 116 (27 residues), see Phobius details amino acids 244 to 262 (19 residues), see Phobius details amino acids 276 to 301 (26 residues), see Phobius details amino acids 313 to 334 (22 residues), see Phobius details amino acids 354 to 377 (24 residues), see Phobius details PF03707: MHYT" amino acids 62 to 116 (55 residues), 28.7 bits, see alignment 5.9e-11 amino acids 252 to 298 (47 residues), 24.3 bits, see alignment 1.4e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (990 amino acids)

>mRNA_6558 HMMPfam-Bacterial signalling protein N terminal repeat-PF03707 (Rhodosporidium toruloides IFO0880)
MAAGDFIELEAHYNGVYIFLSYLVSFVGAWTTLEMLLKRTGTRGWWNVMLLLGAGIAFGS
TATFGMHFVGNQAVTLHFPPPWQGAGVPLSYNAGFTILSLVVSCISMIIAFSFIGLRFDV
PRWRSRMADVEQGSLPEKSDDTAYDDEYGTDNLDKKDADFATGAAFDPDVKADSPEDGRQ
TRFHLPPGRKMSLSSTFDVALPKRHNKVAEEKKRAVEDEDEETEDGGDFGVGGARLSGSG
VAKILLAGIVCGGGIAAMHYVGQVSIDSVPLVTNSWYMVFLSVLIAMLCVTVGLYILFVI
FRPKLQHSWYKRIIVAGILAVGVTLMHFVALLGTHYWARQGEALKAGSDNTTKMIIIAII
CVVAPICCILLLVFAYFGQLRLLRQRASRHRVILSTAIFDQNGLLLVHPESGLLPSSRIY
PNKPGEQEKVSLFQLLGDSNRLRLEASKLKLQRSDPAFVAFVKMSWSWRSQRGSAAPGTQ
GGNSSGDGSQGDRAADEESGPSMRLSEAEEMTGSEAEMLRRSVLSFEMAGEEIASEVTGT
PDLKALGVLYDSILKIGHYQVSSKSSGDQFTVTQGQMLVLARRLKNNAEREALVARGFVF
AEPGAVARVTANAYAVPYDRVFEYFRDVYRFTRFGIVKRLDRGRLYGGLLMLQALPGEGL
NIVVEERQHHSLPMVELATLVDPMADRSRFAASNLAVTTVDSVVNAVRQIGDQSLLELVN
TPTATTGYDPSAQLRSLLVGTLRPYLERSLGLDVVNHILPRLHIIPTVVPLTARPGSAYG
TDGLAKNAYLVCLKAIIPSSVTLPGAKLNWLPFPLYQAQAECVARASGTDAGSARPNTGG
SVVEAARFGGSSSASDKSGGRKGSMAESSESDFPFPTATSAPFVSSAFPSAPSAAAQNHP
LAAGLAGGTGKRLSVYSQGSAHEDEEERDSFQPLPQPGASTSEMPRGVPAYSPDWIVGLV
RSSVSQPTRTHQWDWDVPSRPRTTPRKSAT